View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_39 (Length: 465)

Name: NF16533_low_39
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_39
NF16533_low_39
[»] chr2 (4 HSPs)
chr2 (16-455)||(20168881-20169320)
chr2 (16-455)||(20358966-20359403)
chr2 (16-455)||(20144454-20144893)
chr2 (66-146)||(20141799-20141879)
[»] chr3 (16 HSPs)
chr3 (32-248)||(5156098-5156314)
chr3 (32-248)||(5160128-5160343)
chr3 (106-249)||(51943817-51943960)
chr3 (32-240)||(46479643-46479851)
chr3 (106-248)||(46483975-46484117)
chr3 (35-248)||(46473785-46473998)
chr3 (362-449)||(5160445-5160532)
chr3 (356-414)||(45883635-45883693)
chr3 (32-80)||(51942983-51943031)
chr3 (364-454)||(46236656-46236746)
chr3 (165-323)||(47414174-47414332)
chr3 (376-454)||(47397170-47397248)
chr3 (193-250)||(45902968-45903025)
chr3 (362-414)||(5156416-5156468)
chr3 (32-72)||(45883967-45884007)
chr3 (361-441)||(47414068-47414148)
[»] chr8 (4 HSPs)
chr8 (106-248)||(9692774-9692916)
chr8 (352-414)||(9675598-9675660)
chr8 (352-414)||(9692620-9692682)
chr8 (32-70)||(9692952-9692990)
[»] chr4 (1 HSPs)
chr4 (166-248)||(35162426-35162508)


Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 20169320 - 20168881
Alignment:
Q  16 gatagatcagccagcgtcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20169320 gatagatcagccagcgtcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgtgattttcatc 20169221  T
Q  116 ttttgaatggaaactcagtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataa 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20169220 ttttgaatggaaactcagtcaaggttcctttcatggtaagcaagaagatgcaatttattgaagcttatgacggttctaaagttcttcgtcttccttataa 20169121  T
Q  216 aaaaggtcaagatacgcgtcaattctctatgtatannnnnnngccaaacgcaaaagatggactgccagctttaattgagaagatgacttcaaaatatgaa 315  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20169120 aaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaacgcaaaagatggactgccagctttagttgagaagatgacttcaaaatatgaa 20169021  T
Q  316 ttactacatgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaacta 415  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  20169020 ttactacacgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgactttaaaattcctagattcaatgtttcatttgggcttgaaacta 20168921  T
Q  416 gtgataccctaaaggagttaggagtgattttaccattctt 455  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  20168920 gtgataccctaaaggggttaggagtgattttaccattctt 20168881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Original strand, 20358966 - 20359403
Alignment:
Q  16 gatagatcagccagcgtcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  20358966 gatagatcagccagcgtcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaa--ctgtgattttcatc 20359063  T
Q  116 ttttgaatggaaactcagtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataa 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20359064 ttttgaatggaaactcagtcaaggttcctttcatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataa 20359163  T
Q  216 aaaaggtcaagatacgcgtcaattctctatgtatannnnnnngccaaacgcaaaagatggactgccagctttaattgagaagatgacttcaaaatatgaa 315  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  20359164 aaaaggtcaagatacgcgtcaattctctatgtatatttttttgccaaacgcaaaagatggactgccagctttagttgagaagatgacttctaaatatgaa 20359263  T
Q  316 ttactacatgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaacta 415  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20359264 ttactacacgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaacta 20359363  T
Q  416 gtgataccctaaaggagttaggagtgattttaccattctt 455  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  20359364 gtgataccctaaaggagttaggagtgactttaccattctt 20359403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Original strand, 20144454 - 20144893
Alignment:
Q  16 gatagatcagccagcgtcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||    
T  20144454 gatagatcagccagcgtcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttcaaaaacagaaaacagtgattttcatc 20144553  T
Q  116 ttttgaatggaaactcagtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataa 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20144554 ttttgaatggaaactcagtcaaggttcctttcatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataa 20144653  T
Q  216 aaaaggtcaagatacgcgtcaattctctatgtatannnnnnngccaaacgcaaaagatggactgccagctttaattgagaagatgacttcaaaatatgaa 315  Q
    |||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  20144654 aaaaggtcaagatacgcgtcaattctctatgtatatttttttgcctaacgcaaaagatggactgccagctttagttgagaagatgacttctaaatatgaa 20144753  T
Q  316 ttactacatgaaaagcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaacta 415  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20144754 ttactacatgaaaatcttagtctttatgatcaattgaaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaacta 20144853  T
Q  416 gtgataccctaaaggagttaggagtgattttaccattctt 455  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  20144854 gtgataccctaaaggagttaggagtggttttaccattctt 20144893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 20141879 - 20141799
Alignment:
Q  66 atggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatcttttgaatggaaactcagtcaaggttccttt 146  Q
    ||||||||| ||||| |||||||| |||| |||||||   |||||||| ||||||||||||| ||| ||||||||||||||    
T  20141879 atggaatgacaagtttgacctttcaaaaatagaaaacaatgattttcaccttttgaatggaagctccgtcaaggttccttt 20141799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 5156098 - 5156314
Alignment:
Q  32 tcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatcttttgaatggaaactc 131  Q
    ||||||||||||||||| | ||||||| ||||||||||| ||||||||| ||  |||  |||||  || |||  |||||||| ||||||||||| | |||    
T  5156098 tcatctttgctaatgcactctactttaaaggagcatggagtgagaagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagctc 5156197  T
Q  132 agtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacg 231  Q
     ||||||||||| || |||   ||| || |||  |||||||||||||||||||  || | |||||||||||||||||| |||||||||||  |||||| |    
T  5156198 ggtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatggtggctttaaagttcttcgtcttccgtataaaaaaggcaaagataag 5156297  T
Q  232 cgtcaattctctatgta 248  Q
    |||| ||||||||||||    
T  5156298 cgtcgattctctatgta 5156314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 5160128 - 5160343
Alignment:
Q  32 tcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatcttttgaatggaaactc 131  Q
    ||||||||||||||||| | ||||||| ||||||||||| ||| ||||| ||  |||| |||||  || |||  |||||||| ||||||||||||  |||    
T  5160128 tcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgtttcgaaaacgaaagactatgattttcaccttttgaatggag-ctc 5160226  T
Q  132 agtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacg 231  Q
    |||||||||||| || |||   ||| || |||  ||||||||||||||||||||||  | |||||||||||||||||| ||||| |||||  |||||| |    
T  5160227 agtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatgacgactttaaagttcttcgtcttccgtataagaaaggcaaagataag 5160326  T
Q  232 cgtcaattctctatgta 248  Q
    |||| ||||||||||||    
T  5160327 cgtccattctctatgta 5160343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 51943817 - 51943960
Alignment:
Q  106 gattttcatcttttgaatggaaactcagtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtc 205  Q
    |||||||| ||| | ||||| | ||||||||||||||| || |||   ||||| |||| |||||||||||||| |||||| | || ||||||||||| ||    
T  51943817 gattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagcaataagaagcagtttattgaagtttatgatgattttaaagttcttcatc 51943916  T
Q  206 ttccttataaaaaaggtcaagatacgcgtcaattctctatgtat 249  Q
    |||||||||| |||||| |||||| ||| |||||||||||||||    
T  51943917 ttccttataagaaaggtgaagataagcgccaattctctatgtat 51943960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 46479643 - 46479851
Alignment:
Q  32 tcatctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatcttttgaatggaaactc 131  Q
    |||||||||| |||||| | ||||| | |||||| |||||||| ||||| ||   ||| ||||| ||| ||| ||| ||||| ||||||||||| | | |    
T  46479643 tcatctttgccaatgcactatacttcaaaggagcgtggaatgataagtttgatgcttcaaaaacggaagactacgagtttcaccttttgaatggtagccc 46479742  T
Q  132 agtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacg 231  Q
    |||||||||||| || |||   |||||||||| ||||||||||  ||||| ||| |||| |||||||||  |||||||||||||  ||||  |||||| |    
T  46479743 agtcaaggttcccttcatgaccagcaagaagaagcagtttattagagcttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataag 46479842  T
Q  232 cgtcaattc 240  Q
    |||||||||    
T  46479843 cgtcaattc 46479851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 46483975 - 46484117
Alignment:
Q  106 gattttcatcttttgaatggaaactcagtcaaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtc 205  Q
    |||||||| ||| | ||||| | ||||||||||||||| ||||||   |||||||||| ||||||||||  ||||| ||| |||| |||||||||| |||    
T  46483975 gattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaagaagaagcagtttattagagcttttgatggttttaaagttcttggtc 46484074  T
Q  206 ttccttataaaaaaggtcaagatacgcgtcaattctctatgta 248  Q
    ||||||||||  ||||  |||||| |||||  ||| |||||||    
T  46484075 ttccttataagcaaggcgaagataagcgtcgtttcactatgta 46484117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 248
Target Start/End: Original strand, 46473785 - 46473998
Alignment:
Q  35 tctttgctaatgcattgtactttataggagcatggaatgagaagttcgacctttccaaaacagaaaactgcgattttcatcttttgaatggaaactcagt 134  Q
    ||||||||||||||||||| |||| |||| |||||||| ||||| | ||   ||| | |||| || |||  |||||| | ||| | ||||| | ||||||    
T  46473785 tctttgctaatgcattgtattttaaaggatcatggaatcagaagattgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagt 46473884  T
Q  135 caaggttccttttatggtaagcaagaagatgcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgt 234  Q
     |||||| | ||||||   |||||||||| ||||||||||  ||||| ||| |||| |||||||||| |||||||||||||  ||||  |||||| ||||    
T  46473885 taaggtttcctttatgactagcaagaagaagcagtttattagagcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgt 46473984  T
Q  235 caattctctatgta 248  Q
    |  ||| |||||||    
T  46473985 cgtttcactatgta 46473998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 5160445 - 5160532
Alignment:
Q  362 aagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgattttacc 449  Q
    ||||||||||||| | |||||||||||||||  ||||||||| ||||||||||  |||||  || |||||||||||||||| ||||||    
T  5160445 aagtaggtgaattcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacc 5160532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 45883693 - 45883635
Alignment:
Q  356 aagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 414  Q
    |||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  45883693 aagtcaaagtaggtgacttcagaattccaagattcaatgtttcatttgggcttgaaact 45883635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 51942983 - 51943031
Alignment:
Q  32 tcatctttgctaatgcattgtactttataggagcatggaatgagaagtt 80  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  51942983 tcatctttgctaatgcgttgtactttagaggagcatggaatgagaagtt 51943031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 454
Target Start/End: Complemental strand, 46236746 - 46236656
Alignment:
Q  364 gtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgattttaccattct 454  Q
    |||||||| || || ||||||||||||||| |||| |||||  ||||||||| | ||||  | ||||||||||||||||||||||| ||||    
T  46236746 gtaggtgagttcaagattccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttct 46236656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 47414332 - 47414174
Alignment:
Q  165 gcagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtatannnnnnngccaaac 264  Q
    ||||||||||| ||||| ||| | || |||||||||| | ||||||||||| |||||  ||||||||||  ||||||||||||| |        ||||||    
T  47414332 gcagtttattggagcttttgatgattttaaagttctttgccttccttataataaaggagaagatacgcggaaattctctatgtacatttttcttccaaac 47414233  T
Q  265 gcaaaagatggactgccagctttaattgagaagatgacttcaaaatatgaattactaca 323  Q
     ||| |||||||||| |||||||  |||||||| || ||||  ||| ||| ||||||||    
T  47414232 acaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactaca 47414174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 454
Target Start/End: Complemental strand, 47397248 - 47397170
Alignment:
Q  376 aaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgattttaccattct 454  Q
    |||||||||||||||||  ||||| || |||||||||||  |||||   | ||||||||||||||||||||||| ||||    
T  47397248 aaaattccaagattcaaattttcaatttggcttgaaacttctgatatgttgaaggagttaggagtgattttacctttct 47397170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 45902968 - 45903025
Alignment:
Q  193 aaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgtata 250  Q
    ||||| ||||||||||||||| |  ||||  |||||| ||||||||||||||||||||    
T  45902968 aaagtacttcgtcttccttatgagcaaggagaagataagcgtcaattctctatgtata 45903025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 5156416 - 5156468
Alignment:
Q  362 aagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 414  Q
    |||||| |||||| | |||||||||||||||  ||||||||| ||||||||||    
T  5156416 aagtagttgaattcagaattccaagattcaaaatttcatttgagcttgaaact 5156468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 45884007 - 45883967
Alignment:
Q  32 tcatctttgctaatgcattgtactttataggagcatggaat 72  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  45884007 tcatatttgctaatgcattgtactttaagggagcatggaat 45883967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 47414148 - 47414068
Alignment:
Q  361 aaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtg 441  Q
    ||||||||||| || | ||||||||||||||| ||||||||||  |  |||| |  ||||| ||| |||||||||||||||    
T  47414148 aaagtaggtgacttcagaattccaagattcaaggtttcatttgaacaagaaatttctgatatcctgaaggagttaggagtg 47414068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 9692916 - 9692774
Alignment:
Q  106 gattttcatcttttgaatggaaactcagtcaaggttccttttatggtaagcaagaa-gatgcagtttattgaagcttatgacggttctaaagttcttcgt 204  Q
    |||||||| |||  |||||| | ||||||||||||||||||||||   |||||    ||| |||||||||  ||||| ||| |||| |||||||||||||    
T  9692916 gattttcaccttccgaatggcagctcagtcaaggttccttttatgagcagcaaccttgat-cagtttattagagcttttgatggttttaaagttcttcgt 9692818  T
Q  205 cttccttataaaaaaggtcaagatacgcgtcaattctctatgta 248  Q
    |||||||||||  ||||  || ||| ||| ||||||||||||||    
T  9692817 cttccttataattaaggaaaaaataagcgacaattctctatgta 9692774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 9675660 - 9675598
Alignment:
Q  352 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 414  Q
    |||| ||||||||||||| | ||  ||||||||||||||||  ||||||||||||||||||||    
T  9675660 aaacgagtgaaagtaggtaatttccaaattccaagattcaaattttcatttgggcttgaaact 9675598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 414
Target Start/End: Complemental strand, 9692682 - 9692620
Alignment:
Q  352 aaacaagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaact 414  Q
    |||| ||||| | ||||||||||  ||||||||||||||||  ||||||||||||||||||||    
T  9692682 aaactagtgagaataggtgaattccaaattccaagattcaaattttcatttgggcttgaaact 9692620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 9692990 - 9692952
Alignment:
Q  32 tcatctttgctaatgcattgtactttataggagcatgga 70  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  9692990 tcatctttgctaatgcattgtattttaaaggagcatgga 9692952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 35162426 - 35162508
Alignment:
Q  166 cagtttattgaagcttatgacggttctaaagttcttcgtcttccttataaaaaaggtcaagatacgcgtcaattctctatgta 248  Q
    |||||||||  ||||| ||| |||| ||||||||||||||||||||||||  ||||  |||||  |||  |||||||||||||    
T  35162426 cagtttattagagcttttgatggttttaaagttcttcgtcttccttataagcaaggaaaagatgagcggaaattctctatgta 35162508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University