View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_40 (Length: 454)
Name: NF16533_low_40
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 5 - 402
Target Start/End: Complemental strand, 23756461 - 23756062
Alignment:
| Q |
5 |
aaaggttgtaaaatttgtgtgggcacaagcccacacatagagcagcatacatccttccatgctaaagtatcaagtttatagttgtgaccagatattcgaa |
104 |
Q |
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| T |
23756461 |
aaaggttgtaaaatttgtgtgggcacaagcccacacatagagcagcatacatccttccatgctaaagtatcaagtttatagttgtgaccagatattcgag |
23756362 |
T |
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| Q |
105 |
cgcttcctagtgccccaatcttcgccctagtcagttagatgattaacctccaaactatgtgatcaaggtgttcgggtcttgcgcttcgtctctt--cgac |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | || |
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| T |
23756361 |
cgcttcctagtgccccaatcttcgccctagtcagttagatgattaacctccaagctatgcgatcaaggtgttcgggtcttgcgcttcgtctctctccaac |
23756262 |
T |
|
| Q |
203 |
caggcacggggagcgatgggcctataggcgaagtcacattcggtctacaatcccccaagcacgagggtcggtcgacccatccaattcaaaagttgaatta |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23756261 |
caggcacggggagcgatgggcctataggcgaagtcacattcagtctacaatcccccaagcacgagggtcggtcgacccatccaattcaaaagttgaatta |
23756162 |
T |
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| Q |
303 |
aaccaataaattacgatcaaagtagggccataatagagtctacataagcactcctactttaggggtatcattgagctaagtgtgtgtgagctagtgttct |
402 |
Q |
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| T |
23756161 |
aaccaataaattacgatcaaagtagggccataatagagtctacataagcactcctagtttaggggtatcattgagctaagtgtgtgtgagctagtgttct |
23756062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 23779834 - 23779794
Alignment:
| Q |
362 |
taggggtatcattgagctaagtgtgtgtgagctagtgttct |
402 |
Q |
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| T |
23779834 |
taggggcatcattgagctaagtgtgtacgagctagtgttct |
23779794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 33279231 - 33279178
Alignment:
| Q |
348 |
aagcactcctactttaggggtatcattgagctaagtgtgtgtgagctagtgttc |
401 |
Q |
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|||||||| || |||||||| ||||||||||||||||||| |||||||||||| |
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| T |
33279231 |
aagcactcgtagtttaggggcatcattgagctaagtgtgtacgagctagtgttc |
33279178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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