View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_41 (Length: 448)
Name: NF16533_low_41
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Original strand, 52158034 - 52158454
Alignment:
| Q |
12 |
agcaaaggtggtatgagcattatttcaactagagttatacaaagatcatttttcttatatggtctttttgtttcctttcttgggaaaccagcacatggaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52158034 |
agcaaaggtggtatgagcattatttcaactagagttatacaaagatcatttttcttatatggtctttttgtttcctttcttgggaaaccagcacatggaa |
52158133 |
T |
|
| Q |
112 |
gatggattatggaataggatgagcaggaaatcaatactagtaacatgcaaggaaaaaccaacttctctggttccttcgtgaaatggaatggaaatggcag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52158134 |
gatggattatggaataggatgagcaggaaatcaatactagtaacatgcaaggaaaaagcaacttctctggttccttcgtgaaatggaatggaaatggcag |
52158233 |
T |
|
| Q |
212 |
caaagtacaaaatcaagcatgtctcagagaggcaaggaagagagatgagtaggaaatcacctcaagaactcctccattcgaatactttaaaactcgaaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52158234 |
caaagtacaaaatcaagcatgtctcagagaggcaaggaagagagatgagtaggaaatcacctcaagaactcctccattcgaatactttaaaactcgaaga |
52158333 |
T |
|
| Q |
312 |
aaagcttttgtccgttgagttttcgcttttgctacacaaaataacatgttgtcaccaacaattctacaaataaagaattaaacaactaattgcagcagta |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52158334 |
aaagcttttgtccgttgagttttcgcttttgctacacaaaataacatgttgtcaccaacaattctacaaataaagaattaaacaactaattgcagcagta |
52158433 |
T |
|
| Q |
412 |
aacaggttgaccacatgtaat |
432 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
52158434 |
aacaggttgaccacatgtaat |
52158454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University