View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_42 (Length: 447)
Name: NF16533_low_42
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 12164941 - 12165235
Alignment:
| Q |
19 |
atacataagttgcagactgtgtggggtggaaagcatcccagaacacatattgtgctctgtttgcacatggaaattgcattgggagacatgatatttggcc |
118 |
Q |
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| T |
12164941 |
atacataagttgcagactgcgttgggtgaaaagcatcccagaacacatattgtgctctgtttgcacatggaaattgcattgggagacatgatatttggcc |
12165040 |
T |
|
| Q |
119 |
tctattccttccaagaccacaacaagctctatcaataacactgaatgctgcaaccacaacaaaaaatcaccattatgaacacaaatccatcgtattcggt |
218 |
Q |
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| T |
12165041 |
tctattccttccaagaccacaacaagctctatcaataacactgaatgctgcaaccacaacaaaaaatcaccattatgaacacaaatccatcgtcttcggt |
12165140 |
T |
|
| Q |
219 |
tgaataaacaacttaattaagctcttatagtaaaagataaaatcaaatcaaattgtttatattggttgtaaactatgaagcacggatgcggacac |
313 |
Q |
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| T |
12165141 |
tgaataaacaacttaattaagctcttatagcaaaagataaaataaaataaaattgtttatattggttgtaaactatgaagcacggatgcagacac |
12165235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 370 - 429
Target Start/End: Original strand, 12165328 - 12165387
Alignment:
| Q |
370 |
attattagtagtattatatcttaccataggcagcagggttattaagaatatcaccaaaga |
429 |
Q |
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| T |
12165328 |
attattagtagtattaaatcttaccataggcagcagggttattaagaatatcaccaaaga |
12165387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 14216843 - 14216885
Alignment:
| Q |
291 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
334 |
Q |
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| T |
14216843 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14216885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 14222972 - 14223014
Alignment:
| Q |
291 |
ctatgaagcacggatgcggacacagacactgacacggatactga |
334 |
Q |
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| T |
14222972 |
ctatgaagcacggatgcggacacagacac-gacacggacactga |
14223014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 48588564 - 48588592
Alignment:
| Q |
218 |
ttgaataaacaacttaattaagctcttat |
246 |
Q |
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| T |
48588564 |
ttgaataaacaacttaattaagctcttat |
48588592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 19213773 - 19213807
Alignment:
| Q |
291 |
ctatgaagcacggatgcggacacagacactgacac |
325 |
Q |
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| T |
19213773 |
ctatgaagcacggatgcggacacggacactgacac |
19213807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Original strand, 25791616 - 25791650
Alignment:
| Q |
292 |
tatgaagcacggatgcggacacagacactgacacg |
326 |
Q |
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| T |
25791616 |
tatgaagcacggatacggacacagacactgacacg |
25791650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 276
Target Start/End: Complemental strand, 11560663 - 11560630
Alignment:
| Q |
243 |
ttatagtaaaagataaaatcaaatcaaattgttt |
276 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
11560663 |
ttatagcaaaagataaaatcaaatcaaattgttt |
11560630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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