View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_43 (Length: 447)
Name: NF16533_low_43
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 26642188 - 26642621
Alignment:
| Q |
1 |
ctggatcattctgaattcactgatgcctcaggccaaccagttcaatatcaaatataagtgtccctaaagttgaaccttcaccatttgcaagtcgagtcgg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642188 |
ctggatcattctgaattcactgatgcctcaagccaaccagttcaatatcaaatataagtgtccctaaagttgaaccttcaccatttgcaagtcgagtcgg |
26642287 |
T |
|
| Q |
101 |
attaaaaatggtagtgaacagcctctgcctgtcaaagaacttttttattttatttgaaagaagacattaaaaattagtactatagtcgtcaatcaaacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||| |||| ||||||||||||| |
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| T |
26642288 |
attaaaaatggtagtgaacagcctctgcctgtcaaagaactttttt-tttta----aaagaatacaataaaaattagtactgtagtggtcaatcaaacgt |
26642382 |
T |
|
| Q |
201 |
atataattagctccaactagagaatatatatatgtgcgcgcgcatgtgtttgtgatgaaaaaacctatcaatttaggtaatgtatactgtatatatgcat |
300 |
Q |
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||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
26642383 |
atataattagctccaactagagaatatatgt--gtgcgcgcgcgtgtgtttgtgatgaaaaaacctatcaatttagataatgtatattgtatatatgcat |
26642480 |
T |
|
| Q |
301 |
aaaatcaaacgttactagataattctggatcataaaaggattcttacattaggcgggataggttcctgtgatgtgttctgatacccaagtgatggaggta |
400 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642481 |
aaaatcaaacgttactaggtaattctggatcataaaaggattcttacattaggtgggataggttcctgtgatgtgttctgatacccaagtgatggaggta |
26642580 |
T |
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| Q |
401 |
tgacgactctacgaataccaccgactttcattcatctcact |
441 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| |
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| T |
26642581 |
tgacgactctacgaataccaccgactttcattgatcgcact |
26642621 |
T |
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