View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_44 (Length: 431)

Name: NF16533_low_44
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_44
NF16533_low_44
[»] chr1 (32 HSPs)
chr1 (18-431)||(26830371-26830785)
chr1 (108-260)||(18190060-18190212)
chr1 (110-224)||(40181862-40181976)
chr1 (109-225)||(40258886-40259002)
chr1 (101-185)||(37598861-37598945)
chr1 (101-191)||(5898211-5898301)
chr1 (101-260)||(38078606-38078768)
chr1 (110-191)||(1815281-1815362)
chr1 (101-215)||(22515832-22515946)
chr1 (101-217)||(46348328-46348444)
chr1 (109-215)||(1486657-1486768)
chr1 (101-191)||(18337353-18337443)
chr1 (101-260)||(42359394-42359561)
chr1 (101-191)||(51410049-51410139)
chr1 (211-260)||(10577798-10577847)
chr1 (101-161)||(9828109-9828169)
chr1 (146-260)||(22881606-22881722)
chr1 (101-164)||(47989559-47989622)
chr1 (18-68)||(26817092-26817142)
chr1 (120-187)||(8842678-8842745)
chr1 (101-164)||(40917811-40917874)
chr1 (101-155)||(6427535-6427589)
chr1 (218-260)||(6612241-6612283)
chr1 (222-260)||(25934575-25934613)
chr1 (18-68)||(26790382-26790432)
chr1 (211-260)||(398828-398877)
chr1 (119-217)||(2896084-2896182)
chr1 (211-260)||(23531841-23531890)
chr1 (119-155)||(6427595-6427631)
chr1 (151-220)||(31672890-31672959)
chr1 (119-187)||(39130730-39130798)
chr1 (119-179)||(43492457-43492517)
[»] chr4 (29 HSPs)
chr4 (101-260)||(23292931-23293098)
chr4 (101-191)||(12895219-12895309)
chr4 (103-218)||(8423665-8423780)
chr4 (109-191)||(49431050-49431132)
chr4 (109-260)||(4157105-4157255)
chr4 (101-226)||(35161025-35161150)
chr4 (101-180)||(34306749-34306828)
chr4 (139-227)||(54580006-54580094)
chr4 (101-191)||(35157930-35158020)
chr4 (126-227)||(29205432-29205533)
chr4 (109-217)||(21945501-21945609)
chr4 (101-160)||(27706111-27706170)
chr4 (101-164)||(30982812-30982875)
chr4 (109-191)||(28964201-28964283)
chr4 (101-260)||(42640479-42640638)
chr4 (210-260)||(44081639-44081689)
chr4 (199-260)||(28470344-28470405)
chr4 (101-144)||(11596302-11596345)
chr4 (199-258)||(21873414-21873473)
chr4 (199-258)||(21929275-21929334)
chr4 (101-220)||(715550-715672)
chr4 (101-220)||(752876-752998)
chr4 (101-260)||(3947706-3947871)
chr4 (138-191)||(9996864-9996917)
chr4 (199-260)||(47191036-47191097)
chr4 (151-191)||(6879460-6879500)
chr4 (101-161)||(14465010-14465070)
chr4 (101-149)||(28084590-28084638)
chr4 (101-161)||(36635384-36635444)
[»] chr6 (29 HSPs)
chr6 (101-254)||(28715256-28715409)
chr6 (101-191)||(28152122-28152212)
chr6 (101-190)||(32978844-32978933)
chr6 (101-220)||(4877937-4878056)
chr6 (101-217)||(17841534-17841650)
chr6 (101-162)||(23130406-23130467)
chr6 (171-260)||(5970123-5970214)
chr6 (151-260)||(7938063-7938180)
chr6 (101-217)||(7977775-7977891)
chr6 (101-260)||(8776913-8777085)
chr6 (101-191)||(13360318-13360407)
chr6 (101-191)||(32511611-32511701)
chr6 (119-217)||(853822-853920)
chr6 (101-260)||(7377932-7378093)
chr6 (101-189)||(6898226-6898314)
chr6 (120-217)||(9658877-9658974)
chr6 (220-260)||(10294054-10294094)
chr6 (101-164)||(10339059-10339122)
chr6 (101-164)||(16766759-16766822)
chr6 (141-217)||(33001274-33001350)
chr6 (101-191)||(7265538-7265628)
chr6 (101-191)||(10770612-10770709)
chr6 (210-260)||(10889036-10889086)
chr6 (109-191)||(24645505-24645587)
chr6 (211-244)||(2153950-2153983)
chr6 (199-260)||(34225852-34225913)
chr6 (157-189)||(7973680-7973712)
chr6 (199-260)||(8713932-8713995)
chr6 (101-161)||(17327595-17327655)
[»] chr7 (24 HSPs)
chr7 (101-260)||(9778455-9778619)
chr7 (101-191)||(598232-598322)
chr7 (109-191)||(1401049-1401129)
chr7 (101-191)||(15680833-15680923)
chr7 (101-189)||(21880178-21880266)
chr7 (151-260)||(11061071-11061188)
chr7 (101-220)||(20549786-20549905)
chr7 (101-161)||(5409776-5409836)
chr7 (109-189)||(5835273-5835353)
chr7 (101-161)||(43027409-43027469)
chr7 (104-191)||(33994236-33994323)
chr7 (101-260)||(13770638-13770810)
chr7 (109-187)||(21864836-21864914)
chr7 (142-258)||(42720876-42720994)
chr7 (101-154)||(29763134-29763187)
chr7 (104-164)||(26033398-26033458)
chr7 (205-260)||(1656631-1656686)
chr7 (101-164)||(24339704-24339767)
chr7 (109-191)||(7973076-7973158)
chr7 (157-191)||(27229312-27229346)
chr7 (211-260)||(21141045-21141094)
chr7 (109-227)||(27093366-27093484)
chr7 (109-227)||(27184817-27184935)
chr7 (101-161)||(32093959-32094020)
[»] chr2 (16 HSPs)
chr2 (101-260)||(2438664-2438828)
chr2 (101-189)||(18840958-18841046)
chr2 (101-260)||(38117104-38117259)
chr2 (101-191)||(28596493-28596583)
chr2 (101-217)||(37558975-37559091)
chr2 (157-260)||(44860275-44860378)
chr2 (101-260)||(26769464-26769636)
chr2 (119-191)||(5367216-5367288)
chr2 (140-217)||(6940253-6940330)
chr2 (101-185)||(15972903-15972987)
chr2 (104-191)||(5040758-5040845)
chr2 (101-164)||(37419805-37419868)
chr2 (141-191)||(20242712-20242762)
chr2 (109-178)||(12224260-12224329)
chr2 (157-189)||(17124207-17124239)
chr2 (101-161)||(42511327-42511387)
[»] chr5 (26 HSPs)
chr5 (101-217)||(21191001-21191117)
chr5 (109-220)||(42893355-42893466)
chr5 (101-191)||(43564905-43564995)
chr5 (101-214)||(21576690-21576803)
chr5 (100-186)||(26312798-26312884)
chr5 (101-191)||(4105283-4105373)
chr5 (169-260)||(6471902-6471993)
chr5 (101-190)||(14873542-14873636)
chr5 (101-191)||(21194068-21194158)
chr5 (211-260)||(23016054-23016103)
chr5 (209-260)||(19453119-19453170)
chr5 (101-144)||(19820333-19820376)
chr5 (101-148)||(35017110-35017157)
chr5 (210-260)||(6770490-6770540)
chr5 (218-260)||(15382424-15382466)
chr5 (101-191)||(30502333-30502423)
chr5 (101-191)||(30542676-30542766)
chr5 (211-260)||(6401445-6401494)
chr5 (217-258)||(13287468-13287509)
chr5 (211-260)||(21522697-21522746)
chr5 (211-260)||(21533263-21533312)
chr5 (104-217)||(31084321-31084439)
chr5 (199-260)||(32766986-32767047)
chr5 (104-148)||(17088358-17088402)
chr5 (218-258)||(20683330-20683370)
chr5 (109-189)||(27932261-27932341)
[»] chr3 (32 HSPs)
chr3 (101-217)||(55401073-55401189)
chr3 (109-191)||(40993288-40993370)
chr3 (204-260)||(14027962-14028018)
chr3 (101-217)||(27505244-27505365)
chr3 (109-191)||(11252002-11252082)
chr3 (111-217)||(10954950-10955056)
chr3 (101-189)||(20503491-20503579)
chr3 (101-191)||(8842353-8842443)
chr3 (169-260)||(11313813-11313904)
chr3 (101-191)||(25775533-25775621)
chr3 (109-217)||(28917999-28918109)
chr3 (101-146)||(11610578-11610623)
chr3 (157-260)||(21479071-21479176)
chr3 (103-191)||(3631708-3631796)
chr3 (199-260)||(14747514-14747577)
chr3 (119-187)||(23657767-23657835)
chr3 (217-260)||(750688-750731)
chr3 (109-164)||(4987233-4987288)
chr3 (108-179)||(7171537-7171608)
chr3 (104-191)||(18426973-18427060)
chr3 (217-260)||(34307849-34307892)
chr3 (151-227)||(51206348-51206424)
chr3 (169-260)||(7614428-7614519)
chr3 (151-234)||(7928432-7928514)
chr3 (101-147)||(40052380-40052426)
chr3 (101-191)||(8789493-8789585)
chr3 (211-260)||(10318103-10318152)
chr3 (211-260)||(10335349-10335398)
chr3 (101-189)||(24204986-24205074)
chr3 (199-260)||(32400748-32400806)
chr3 (157-222)||(1509532-1509597)
chr3 (101-145)||(34185057-34185101)
[»] scaffold0053 (1 HSPs)
scaffold0053 (101-260)||(8745-8912)
[»] chr8 (28 HSPs)
chr8 (101-227)||(5813578-5813706)
chr8 (109-248)||(8342939-8343073)
chr8 (109-191)||(20679348-20679430)
chr8 (119-191)||(31557020-31557092)
chr8 (101-167)||(12570443-12570509)
chr8 (101-167)||(12570669-12570735)
chr8 (101-226)||(3025540-3025665)
chr8 (157-234)||(25566822-25566899)
chr8 (101-180)||(926733-926812)
chr8 (205-260)||(3951586-3951641)
chr8 (120-191)||(9414840-9414910)
chr8 (104-191)||(14134723-14134810)
chr8 (109-217)||(36450707-36450815)
chr8 (210-260)||(43737875-43737925)
chr8 (127-191)||(20873093-20873157)
chr8 (101-217)||(18407717-18407833)
chr8 (151-220)||(24613516-24613584)
chr8 (101-164)||(29447506-29447569)
chr8 (109-155)||(22943302-22943348)
chr8 (218-260)||(24857956-24857998)
chr8 (211-260)||(926851-926900)
chr8 (199-260)||(16642017-16642078)
chr8 (109-217)||(4298842-4298947)
chr8 (109-161)||(8343381-8343433)
chr8 (150-232)||(13844590-13844674)
chr8 (101-189)||(24413504-24413592)
chr8 (212-260)||(24413624-24413672)
chr8 (102-190)||(33405330-33405418)
[»] scaffold0050 (1 HSPs)
scaffold0050 (101-189)||(70304-70392)
[»] scaffold0361 (1 HSPs)
scaffold0361 (101-217)||(14528-14641)
[»] scaffold0027 (1 HSPs)
scaffold0027 (218-260)||(46629-46671)
[»] scaffold0512 (1 HSPs)
scaffold0512 (109-178)||(4989-5058)
[»] scaffold0116 (1 HSPs)
scaffold0116 (211-260)||(9845-9894)
[»] scaffold0003 (1 HSPs)
scaffold0003 (101-162)||(241658-241719)
[»] scaffold0083 (1 HSPs)
scaffold0083 (101-189)||(45475-45563)
[»] scaffold0008 (1 HSPs)
scaffold0008 (104-164)||(263309-263369)
[»] scaffold0122 (1 HSPs)
scaffold0122 (99-252)||(7971-8125)
[»] scaffold0019 (1 HSPs)
scaffold0019 (109-164)||(71787-71842)
[»] scaffold0793 (1 HSPs)
scaffold0793 (101-220)||(4826-4948)
[»] scaffold0086 (1 HSPs)
scaffold0086 (102-164)||(2990-3052)
[»] scaffold0136 (1 HSPs)
scaffold0136 (109-162)||(3791-3844)
[»] scaffold0036 (1 HSPs)
scaffold0036 (101-162)||(9681-9742)
[»] scaffold0475 (1 HSPs)
scaffold0475 (101-185)||(3338-3422)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 26830785 - 26830371
Alignment:
Q  18 tttatatcccttccatcatcacccttttaaatgctgttggaactccaaggtannnnnnnnnnnnnnn-aactcaactctaccttaagcacgtacactcct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||| ||||||||    
T  26830785 tttatatcccttccatcatcacccttttaaatgctgttggaactccaaggtattttttttatttttttaactcaactctaccttaagcacggacactcct 26830686  T
Q  117 ctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnn-aaattattagctgtgtc 215  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||        |||||||||  |||||     
T  26830685 ctgattaggcgtgtcccggtatcgaacacgtgtagtgtctgacac-gacacttataattacatttaattatgtgattttttttaaattattatttgtgtt 26830587  T
Q  216 ggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttcagaccatatctaatggttgattgtaagactaaaaattgttctttaattcacgttta 315  Q
    ||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  26830586 ggtatccgtgtcgtgtccgatgtccgtgtccatatccgtgcttcagaccatatctaatggttgattgtaagactaaaaaatgttcattaattcacgttta 26830487  T
Q  316 tgtaatctcccttatgtaaatagcattgtttatctcttagggaaaaaagcacatgccacttaataaataaagaaataactgctgcttaattgtctcattg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26830486 tgtaatctcccttatgtaaatagcattgtttatctcttagggaaaaaagcacatgccacttaataaataaataaataactgctgcttaattgtctcattg 26830387  T
Q  416 gttttaaaaagcaggg 431  Q
    ||||||||||||||||    
T  26830386 gttttaaaaagcaggg 26830371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 18190060 - 18190212
Alignment:
Q  108 tacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattatta 207  Q
    |||||||||| ||||||| |||||||| | |||||||||||| |||||||||| ||| |||| |||||||||| |||||||| |       |||||||||    
T  18190060 tacactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaattttttcaaattatta 18190159  T
Q  208 gctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    | |||||| || |||||||| |||||| ||| | ||||||||||| |||||||    
T  18190160 ggtgtgtcagtatccgtgtcgtgtccggtgtccatgtccgtatccatgcttca 18190212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 40181976 - 40181862
Alignment:
Q  110 cactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagc 209  Q
    |||||||| |||||||||||||||| | | |||||||||| ||||| ||||||||||| |||||||||||| ||||||||||       |||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatgtgattttctcaaattattagc 40181877  T
Q  210 tgtgtcggtgtccgt 224  Q
     ||||| ||||||||    
T  40181876 agtgtctgtgtccgt 40181862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 40258886 - 40259002
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    ||||||||| |||||||||||||| | | ||||||| |||| |||||||||||||| |||| |||||||||| ||||||||||       |||||||||     
T  40258886 acactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgattttttcaaattattaa 40258985  T
Q  209 ctgtgtcggtgtccgtg 225  Q
     ||||||||||||||||    
T  40258986 ttgtgtcggtgtccgtg 40259002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 37598945 - 37598861
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaatt 185  Q
    ||||||| ||||||||| |||||||||||||||  | |||||||||||| ||||| |||||||| ||||||||||||||| ||||    
T  37598945 aagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaatt 37598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 5898211 - 5898301
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| |||||| ||||||||| | | |||||||||| ||||||||||||||  | |||||||||||| ||||||||||    
T  5898211 aagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtga 5898301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 38078606 - 38078768
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| | ||||||| |||||||||||||| | | | | ||| |||| ||||| |||||||| |||| |||||||| | ||||||||||       ||    
T  38078606 aagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgattttttcaa 38078705  T
Q  201 attattagctgtgtcg--gtgtccgtg-tcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||  ||||| ||| || |||||| ||| |||||||||||||||||||||    
T  38078706 attattagctgtgtcgacgtgtcagtgttcgtgtccggtgtccgtgtccgtatccgtgcttca 38078768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 1815362 - 1815281
Alignment:
Q  110 cactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||||||| |||||||||||||||| | ||||||| |||| ||||| |||||||| |||| |||||||||| ||||||||||    
T  1815362 cactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtga 1815281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 22515832 - 22515946
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| ||||||||||||| || | ||||| | |||| ||||| |||||||| |||| |||||||||| ||||||||||       ||    
T  22515832 aagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaa 22515931  T
Q  201 attattagctgtgtc 215  Q
    |||||||||||||||    
T  22515932 attattagctgtgtc 22515946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 46348328 - 46348444
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| |||| |||| ||| ||||||||| || | |||||||||||| ||||| |||||||| |||| |||||||||| |||||| |||       ||    
T  46348328 aagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatatgattttttcaa 46348427  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||||||||||||    
T  46348428 attattagctgtgtcgg 46348444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 1486657 - 1486768
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc-----tgacaccgatacttataattacacttaattatgtgannnnnnnaaatt 203  Q
    ||||||||| |||||||||||||||| | |||||||||||| |||||      |||||||| ||||||||||||||| ||||||||||       |||||    
T  1486657 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattttttcaaatt 1486756  T
Q  204 attagctgtgtc 215  Q
    ||||||||||||    
T  1486757 attagctgtgtc 1486768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 18337443 - 18337353
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| ||| |||| ||||||  | |||||||||||| ||||| |||||||| |||| |||||||||| ||||||||||    
T  18337443 aagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtga 18337353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 42359394 - 42359561
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| |||||||||||||||| | ||||||||  ||  |||| |||||||| |||| |||||||||| |||| |||||       ||    
T  42359394 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacactgaattttgtgattttttcaa 42359493  T
Q  201 attattagct--------gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||| |        ||||| ||||||||||  ||| || |||||||||||||||||||||||||    
T  42359494 attattagatgtgtcagcgtgtcagtgtccgtgttgtgtacggtgttcgtgtccgtatccgtgcttca 42359561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 51410139 - 51410049
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| | ||||||  ||||||||||||| || | ||||| |||||| ||||| |||||||| |||| |||||||||| ||||||||||    
T  51410139 aagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtga 51410049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10577798 - 10577847
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  10577798 gtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttca 10577847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 9828169 - 9828109
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| ||||||||| |||||| ||||||||| | |||||||||||| |||||||||||    
T  9828169 aagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacac 9828109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 22881606 - 22881722
Alignment:
Q  146 gtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtg 243  Q
    |||| ||||| |||||||| |||| |||||||||| ||||||||||       |||||||||| ||||||||  |||| ||||| |||||| ||| ||||    
T  22881606 gtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtccggtgtccgtg 22881705  T
Q  244 tccgtatccgtgcttca 260  Q
    ||  |||||||||||||    
T  22881706 tctatatccgtgcttca 22881722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 47989622 - 47989559
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||| ||||||||| |||||||||||||||||| || |||| |||| ||||| ||||||||    
T  47989622 aagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccga 47989559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 26817142 - 26817092
Alignment:
Q  18 tttatatcccttccatcatcacccttttaaatgctgttggaactccaaggt 68  Q
    ||||| |||||||||||||||||||| |||| ||||||||||| |||||||    
T  26817142 tttatgtcccttccatcatcacccttctaaaagctgttggaacaccaaggt 26817092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 8842678 - 8842745
Alignment:
Q  120 attaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattat 187  Q
    ||||||||||||| ||| ||||| |||||| ||||| |||||| |||| |||||||||| | ||||||    
T  8842678 attaggcgtgtcctgatgtcggatacgtgtcgtgtccgacaccaatacatataattacattaaattat 8842745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 40917874 - 40917811
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||| ||| ||||| |||||||||||||||| | |||||||||||| |||||  |||||||    
T  40917874 aagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccga 40917811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 6427589 - 6427535
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc 155  Q
    ||||||| |||||| || |||||||||||||||| | |||||||||||| |||||    
T  6427589 aagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtc 6427535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 6612241 - 6612283
Alignment:
Q  218 tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| |||||| |||||||||||||||| ||||||||    
T  6612241 tgtccgtgtcgtgtccggtgttcgtgtccgtatctgtgcttca 6612283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 25934613 - 25934575
Alignment:
Q  222 cgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  25934613 cgtgtcatgtccggtgtccgtgtccgtatccgtgcttca 25934575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 26790432 - 26790382
Alignment:
Q  18 tttatatcccttccatcatcacccttttaaatgctgttggaactccaaggt 68  Q
    ||||| |||||||||||||||||||| | || ||||||||||| |||||||    
T  26790432 tttatgtcccttccatcatcacccttcttaaagctgttggaacaccaaggt 26790382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 398828 - 398877
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||| ||||||||||| |||||| ||| || ||||||||||||||||||    
T  398828 gtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtgcttca 398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 2896084 - 2896182
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg 217  Q
    ||||||| |||||||| | |||||||| ||| |||||||||||||| |  ||||  |||||| ||||||||||       ||||||||||| |||||||    
T  2896084 gattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcgg 2896182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 23531841 - 23531890
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||||| || |||||  ||| |||||||||||||||||||||    
T  23531841 gtgtcggtgtccgtatcgtgtccagtgtccgtgtccgtatccgtgcttca 23531890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 6427631 - 6427595
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtc 155  Q
    |||||||||||||||| |||||||||||||| |||||    
T  6427631 gattaggcgtgtcccggtatcggacacgtgtcgtgtc 6427595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 31672890 - 31672959
Alignment:
Q  151 gtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgt 220  Q
    ||||| |||||||| |||| |||||||||| ||||| ||||       ||||||||||||||||||||||    
T  31672890 gtgtccgacaccgagacttgtaattacactgaattaagtgattttttcaaattattagctgtgtcggtgt 31672959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 39130730 - 39130798
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattat 187  Q
    ||||| ||||||||| || |||  ||||||| ||||| |||||||| || |||||||||||| ||||||    
T  39130730 gattaagcgtgtcccaatgtcgagcacgtgttgtgtccgacaccgacacatataattacactaaattat 39130798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 43492457 - 43492517
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacac 179  Q
    |||||||||||| ||| | ||||||| |||| |||||||||||||| ||  ||||||||||    
T  43492457 gattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataattacac 43492517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 23292931 - 23293098
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||| |||||||| |||| |||||| ||| ||||||||||       ||    
T  23292931 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaa 23293030  T
Q  201 attattagctgtgtcgg--------tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||||||||        |||||||||| |||||| ||| |||||||||||| ||||||||    
T  23293031 attattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatctgtgcttca 23293098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 12895219 - 12895309
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| |||||||||||||||||| ||||| || ||| ||||| |||||||| ||||||||||||||  ||||||||||    
T  12895219 aagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacacaaaattatgtga 12895309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 8423665 - 8423780
Alignment:
Q  103 gcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaat 202  Q
    ||||| ||||| ||| |||||||||||||||| | |||||||  ||| ||||| |||||||| | ||||||||||||| ||||||||||       ||||    
T  8423665 gcacggacacttctccgattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttctcaaat 8423764  T
Q  203 tattagctgtgtcggt 218  Q
    ||||||| ||||||||    
T  8423765 tattagcggtgtcggt 8423780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 49431132 - 49431050
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||| ||| |||||||||||| | | |||||||||| ||||| |||||||| |||| |||||||||| ||||||||||    
T  49431132 acactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtga 49431050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 4157255 - 4157105
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    |||||||||  |||||| || || || | ||||||| |||| ||||| |||||||| |||| ||||| |||| ||||||||||       ||||||||||    
T  4157255 acactcctcgaattaggtgtttctcggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattgcactaaattatgtgatttttc-aaattattag 4157157  T
Q  209 ctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
     |||||| ||||| ||||| |||| | ||| |||||||||||||||||||||    
T  4157156 ttgtgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatccgtgcttca 4157105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 35161150 - 35161025
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| |||||  || ||||||| |||| ||| | |||||||||||| ||||| ||| | |||||||||||||||||| ||||||||||        |    
T  35161150 aagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtccgactctgatacttataattacactgaattatgtgattttcttga 35161051  T
Q  201 attattagctgtgtcggtgtccgtgt 226  Q
    |||| |||| ||||||||||||||||    
T  35161050 attagtagcagtgtcggtgtccgtgt 35161025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 34306749 - 34306828
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacact 180  Q
    ||||||| ||| ||||| ||||||||||||| || | |||||||||||| ||||| |||||||| |||| ||||||||||    
T  34306749 aagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacact 34306828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 54580006 - 54580094
Alignment:
Q  139 cggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtc 227  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||       |||||||||| |||||| | |||||||||    
T  54580006 cggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgtgattttttcaaattattagttgtgtcagcgtccgtgtc 54580094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 35157930 - 35158020
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||| ||| ||||| |||||| ||| | | ||||| |||| ||||| |||||||| ||||||||||||||| ||||||||||    
T  35157930 aagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtga 35158020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 29205533 - 29205432
Alignment:
Q  126 cgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtg 225  Q
    ||||||||| | ||||||| |||| |||||  ||||||| |||| |||||||||| ||||||||||       ||||||||||| |||| ||||||||||    
T  29205533 cgtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtgattttttcaaattattagccgtgttggtgtccgtg 29205434  T
Q  226 tc 227  Q
    ||    
T  29205433 tc 29205432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 21945609 - 21945501
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    ||||||||| ||||||||||||  || | ||||||| ||||  |||| |||||||| |||| |||||||||| |||||||| |       ||||||||||    
T  21945609 acactcctcggattaggcgtgttgcggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaattattag 21945510  T
Q  209 ctgtgtcgg 217  Q
    |||||||||    
T  21945509 ctgtgtcgg 21945501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 27706111 - 27706170
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgaca 160  Q
    ||||||||||| ||||| |||||||||||||||| ||||||| |||||| ||||| ||||    
T  27706111 aagcacgtacattcctcagattaggcgtgtcccggtatcggatacgtgtcgtgtccgaca 27706170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 30982812 - 30982875
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||| |||||| |  |||||||||||||||| | |||||||||||| ||||||||||||||    
T  30982812 aagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccga 30982875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 28964201 - 28964283
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||| |||||||||||||||  | ||||| | |||| ||||| ||||| || |||| |||||||||| ||||||||||    
T  28964201 acactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaattatgtga 28964283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 42640638 - 42640479
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnn-- 198  Q
    ||||||| | ||||||| |||||||||||||| | |  |||||||||||     | |||||||| |||| |||||||||| ||||||||||             
T  42640638 aagcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgt-----ccgacaccgacacttgtaattacactgaattatgtgattttttttt 42640544  T
Q  199 -aaattattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
     ||||||| |||||||||||  |||||||||  ||||| |||| |||||||||||||||||||||    
T  42640543 caaattatcagctgtgtcggcgtgtccgtgttgtgtccaatgtccgtgtccgtatccgtgcttca 42640479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 44081639 - 44081689
Alignment:
Q  210 tgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||| |||||| |||| ||||||||||||||||||||||| ||||||||    
T  44081639 tgtgtcagtgtccttgtcgtgtccgatgttcgtgtccgtatcggtgcttca 44081689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 28470405 - 28470344
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| |||||| ||||| ||||||| |||| ||| ||| |||||||||||||||||    
T  28470405 aaattattagttgtgtcagtgtctgtgtcatatccggtgtccgtatccgtatccgtgcttca 28470344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 11596302 - 11596345
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggaca 144  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||    
T  11596302 aagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11596345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 21873414 - 21873473
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgctt 258  Q
    |||||||| || ||||| ||||||||||| ||||| |||| |||||| ||||||||||||    
T  21873414 aaattatttgcagtgtcagtgtccgtgtcgtgtccaatgtccgtgtctgtatccgtgctt 21873473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 21929275 - 21929334
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgctt 258  Q
    |||||||| || ||||| ||||||||||| ||||| |||| |||||| ||||||||||||    
T  21929275 aaattatttgcagtgtcagtgtccgtgtcgtgtccaatgtccgtgtctgtatccgtgctt 21929334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 715550 - 715672
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgt--ctgacaccgatacttataattacacttaattatgtga-nnnnnn 197  Q
    ||||||| ||||||||| |||||||||||||||  | ||||||| |||| ||||    |||||| | |||| |||||||||| ||||||||||           
T  715550 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgattttttt 715649  T
Q  198 naaattattagctgtgtcggtgt 220  Q
     ||||||||||||||||||||||    
T  715650 taaattattagctgtgtcggtgt 715672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 752876 - 752998
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgt--ctgacaccgatacttataattacacttaattatgtga-nnnnnn 197  Q
    ||||||| ||||||||| |||||||||||||||  | ||||||| |||| ||||    |||||| | |||| |||||||||| ||||||||||           
T  752876 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgattttttt 752975  T
Q  198 naaattattagctgtgtcggtgt 220  Q
     ||||||||||||||||||||||    
T  752976 taaattattagctgtgtcggtgt 752998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 3947706 - 3947871
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc-----tgacaccgatacttataattacacttaattatgtgannnn 195  Q
    ||||||| ||||||||| ||||||| |||||| | | |||||||||||| |||||      ||||| || |||| |||||||||| ||||||| ||        
T  3947706 aagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgcgatttt 3947805  T
Q  196 nnnaaattattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
       |||||||||||||||||||  |||||||||| |||  | ||| |||||||||||| | ||||||    
T  3947806 ttcaaattattagctgtgtcggcatgtccgtgtc-tgtgtggtgtccgtgtccgtatctgagcttca 3947871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 9996917 - 9996864
Alignment:
Q  138 tcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||||||  ||||||||||||| || |||||||| ||| ||||||||||    
T  9996917 tcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtga 9996864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 47191036 - 47191097
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||| |  |||||||||||||||| | |||| |||||||||| |||||| |||||||    
T  47191036 aaattattatccatgtcggtgtccgtgtcgtatccggtgttcgtgtctgtatccatgcttca 47191097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 6879460 - 6879500
Alignment:
Q  151 gtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||| |||||||| |||| |||||||||||||||||||||    
T  6879460 gtgtccgacaccgacacttgtaattacacttaattatgtga 6879500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 14465010 - 14465070
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| ||||||||| |||||| ||||||||  | ||| |||||||| |||||||||||    
T  14465010 aagcacggacactcctcagattagacgtgtcccagtgtcgaacacgtgtcgtgtctgacac 14465070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 28084638 - 28084590
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgt 149  Q
    ||||||| ||||||||| |||||||||||||||  | ||||||||||||    
T  28084638 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgt 28084590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 36635444 - 36635384
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| |||||| || |||||||||||||||| | || ||| ||||| |||||||||||    
T  36635444 aagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacac 36635384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 28715409 - 28715256
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||||||||| |||  ||||||||||||||| | ||| |||||||| ||||| |||||||| |||| |||||||||| |||||||| |       ||    
T  28715409 aagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcattttttcaa 28715310  T
Q  201 attattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgt 254  Q
    ||||||||| ||||| |||||||| || |||||| ||| |||||||||||||||    
T  28715309 attattagccgtgtcagtgtccgtatcgtgtccggtgtccgtgtccgtatccgt 28715256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 28152212 - 28152122
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| |||||||| ||||||| | |||||||||||| ||||| |||||||| |||| |||||||||| ||||||||||    
T  28152212 aagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtga 28152122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 32978844 - 32978933
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtg 190  Q
    ||||||| ||||||||  |||||| ||||||||| | ||||||| |||| ||||| |||||||| |||| ||||||||||||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacacttaattatgtg 32978933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 4878056 - 4877937
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga-nnnnnnna 199  Q
    ||||||| ||||||||| |||||||||||||| | | ||||||| |||| ||||| |||||||| |||| |||||| ||||||||||||||        |    
T  4878056 aagcacggacactcctcggattaggcgtgtcctg-tgtcggacatgtgtcgtgtccgacaccgacacttgtaattatacttaattatgtgacttttttca 4877958  T
Q  200 aattattagctgtgtcggtgt 220  Q
    |||||||||||||||||||||    
T  4877957 aattattagctgtgtcggtgt 4877937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 17841534 - 17841650
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| ||||||||||||| |  | |||||||| ||| ||||| |||||||  |||| |||||||||| ||||||||||       ||    
T  17841534 aagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacactaaattatgtgattttttcaa 17841633  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||||||||||||    
T  17841634 attattagctgtgtcgg 17841650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 23130406 - 23130467
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacacc 162  Q
    |||||| |||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||    
T  23130406 aagcacatacactcctcagattaggcatgtcccgatatcagacacgtgtcgtgtctgacacc 23130467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 5970123 - 5970214
Alignment:
Q  171 taattacacttaattatgtgannnnnnnaaattattagctgtgtcg--gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| ||||||||||       ||||||||| ||||||||  |||||||||||||||||| ||| |||||||||||| ||||||||    
T  5970123 taattacactgaattatgtgattttttcaaattattaactgtgtcgacgtgtccgtgtcatgtccggtgtccgtgtccgtatctgtgcttca 5970214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 7938180 - 7938063
Alignment:
Q  151 gtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg--------tgtccgtgtcatgtccgatgttcgt 242  Q
    ||||| |||||||| ||||||||||||||| |||||| |||       |||||||||||||||||||        ||||| |||| |||||| ||| |||    
T  7938180 gtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T
Q  243 gtccgtatccgtgcttca 260  Q
    ||||||||||||||||||    
T  7938080 gtccgtatccgtgcttca 7938063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 7977775 - 7977891
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||  ||||||||||||  || | |||||||  ||| ||||| |||||||| |||| |||||||||| |||||||| |       ||    
T  7977775 aagcacgaacactccttagattaggcgtgtttcgttgtcggacatatgttgtgtccgacaccgacacttgtaattacactgaattatgtaattttttcaa 7977874  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||||||||||||    
T  7977875 attattagctgtgtcgg 7977891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 8776913 - 8777085
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtct-----gacaccgatacttataattacacttaattatgtgannnn 195  Q
    ||||||| ||||||||| ||||||| ||||| || | |||||||||||| |||||      |||||| | |||| |||||||||| |||| |||||        
T  8776913 aagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgtcgtgtccgacaccaacacttgtaattacactgaattttgtgatttt 8777012  T
Q  196 nnnaaattattagctgtgtcgg--------tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
       |||||||||| ||||||||        |||||||||| |||||| ||| |||||||||||||||||||||    
T  8777013 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatccgtgcttca 8777085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 13360318 - 13360407
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| |||||| || ||||||||||||| |  | |||||||  ||| |||||||||||||| || |||||||||||| ||||||||||    
T  13360318 aagcacggacactcttcggattaggcgtgtctcagtgtcggacat-tgttgtgtctgacaccgaaacatataattacactgaattatgtga 13360407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 32511611 - 32511701
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| |||||||||||  ||||| || ||||  ||| || || |||||| | ||||||||||||||| ||||||||||    
T  32511611 aagcacggacactcctccgattaggcgtgctccgatgtcagacatatgtcgtatccgacaccaacacttataattacactgaattatgtga 32511701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 853822 - 853920
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg 217  Q
    ||||||||||||| | || |||||||| ||| || || |||||||| |||| ||||| |||||||||||||||       |||||||||| ||||||||    
T  853822 gattaggcgtgtctctatgtcggacacatgtcgtatccgacaccgacacttgtaattgcacttaattatgtgattttttcaaattattagttgtgtcgg 853920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 7378093 - 7377932
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||| ||| |||||| ||||||||| | |||||  | ||| ||||| |||||||| || |||||||||| | ||||||||||       ||    
T  7378093 aagcacggacacttctcagattagccgtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaa 7377994  T
Q  201 attattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||| ||||| |||||||  |||| ||||  |||||| |||  | ||||||||||||||||||    
T  7377993 atttttagcggtgtcggggtgtctgtgttgtgtccggtgtctgggtccgtatccgtgcttca 7377932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 6898226 - 6898314
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| |||||| || ||||||||||||  || | | |||||||  | ||||| |||||||| |||| |||||||||||||||||||    
T  6898226 aagcacgaacactcatcggattaggcgtgtttcggtgttggacacgcttcgtgtccgacaccgacacttgtaattacacttaattatgt 6898314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 9658974 - 9658877
Alignment:
Q  120 attaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg 217  Q
    ||||||||||| ||| | || ||||||||| |||||| ||||||| |  |||||||||||| ||||||||||       ||||||||||| |||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcgg 9658877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 10294094 - 10294054
Alignment:
Q  220 tccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  10294094 tccgtgtcgtgtccggtgttcgtgtccgtatccgtgcttca 10294054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 10339059 - 10339122
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||| ||||||||| |||||||||||||||  | ||||||| |||| ||||| ||||||||    
T  10339059 aagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccga 10339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 16766822 - 16766759
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||| ||| || || |||||||||||||||| | |||||||||||| ||||| ||||||||    
T  16766822 aagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccga 16766759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 33001274 - 33001350
Alignment:
Q  141 gacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg 217  Q
    ||||||||| ||||| |||||||| || |||||||||| ||||||||||||       ||||||||||| |||||||    
T  33001274 gacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtgattttttcaaattattagcagtgtcgg 33001350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 7265538 - 7265628
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| || |||||| |||||||| | | ||| | ||||||| || | ||||| |||||||| || |||||||||||| ||||||||||    
T  7265538 aagcacggacgctcctcggattaggcatattccggtgtcggacatgtattgtgtccgacaccgacacatataattacactgaattatgtga 7265628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 10770612 - 10770709
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacac--gtgtagtgtct-----gacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| |||||||| |||||||  |||||||||  |||| ||||||     |||||||| |||| |||||||||| ||||||||||    
T  10770612 aagcacggacactcctcagattaggcatgtcccggcatcggacacgtgtgtcgtgtctgacacgacaccgacacttgtaattacactgaattatgtga 10770709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 10889036 - 10889086
Alignment:
Q  210 tgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||||||||  ||||| |||||| | ||||||||||||    
T  10889036 tgtgtcggtgtccgtgtcatgtttgatgtccgtgtctgcatccgtgcttca 10889086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 24645587 - 24645505
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||||| || |||||| ||||||  | | |||||||||||| |||||||||||||| |||| ||| || ||| ||||||||||    
T  24645587 acactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtga 24645505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 2153950 - 2153983
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgt 244  Q
    |||||||||||||||||||||||||||| |||||    
T  2153950 gtgtcggtgtccgtgtcatgtccgatgtccgtgt 2153983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 34225852 - 34225913
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| |||||| |||||| | || |||||  ||| |||||||||||||||||||||    
T  34225852 aaattattagttgtgtcagtgtccttatcgtgtccagtgtccgtgtccgtatccgtgcttca 34225913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 7973712 - 7973680
Alignment:
Q  157 gacaccgatacttataattacacttaattatgt 189  Q
    |||||||| ||||||||||||||||||||||||    
T  7973712 gacaccgacacttataattacacttaattatgt 7973680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 8713995 - 8713932
Alignment:
Q  199 aaattattagctgtgtcg--gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||| ||||||||  |||||| ||||||||||| ||| |||||||||||  ||||||||    
T  8713995 aaattattaactgtgtcgacgtgtccatgtcatgtccggtgtccgtgtccgtatttgtgcttca 8713932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 17327595 - 17327655
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| ||||||||| |||||||||||||||  | || ||||||||| ||||| |||||    
T  17327595 aagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacac 17327655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 9778619 - 9778455
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc-----tgacaccgatacttataattacacttaattatgtgannnn 195  Q
    ||||||| ||||||||  |||||||||||||||| | |||||||||||| |||||      |||||||| |||| |||||| ||| ||||||||||        
T  9778619 aagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacgacaccgacacttgtaattatactgaattatgtgatttt 9778520  T
Q  196 nnnaaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
       ||||||| ||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||    
T  9778519 ttcaaattatcagctgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttca 9778455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 598322 - 598232
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||| ||| |||||||||||||||| | |||||||||||| |||||||||||||| ||||| ||||||| ||||||| ||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtga 598232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 1401129 - 1401049
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||| ||||||| |||||||||| |||||||  ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  1401129 acactcctcagattaggtgtgtcccgatgtcggaca--tgtcgtgtcggacaccgatacttataattacactgaattatgtga 1401049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 15680923 - 15680833
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| |||||||||  ||||| |||||| || | |||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||    
T  15680923 aagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatgtga 15680833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 21880266 - 21880178
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| ||||| ||| |||||||||||||| | | ||||||| |||| ||||| |||||||| |||| |||||||||| ||||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 21880178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 11061071 - 11061188
Alignment:
Q  151 gtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgt--------ccgtgtcatgtccgatgttcgt 242  Q
    |||||||||||||| |||| |||||| ||| ||||||||||       ||||||||||||||||||||||        ||||||| | |||||||| |||    
T  11061071 gtgtctgacaccgacacttgtaattatactaaattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgt 11061170  T
Q  243 gtccgtatccgtgcttca 260  Q
    ||||||||||||||||||    
T  11061171 gtccgtatccgtgcttca 11061188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 20549905 - 20549786
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    |||||||  |||||||| ||||||||||||| |  | ||||||| |||| ||||| |||||||| || |||||||||||| ||||| ||||       ||    
T  20549905 aagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattacgtgattttctcaa 20549806  T
Q  201 attattagctgtgtcggtgt 220  Q
    ||||||||| ||||||||||    
T  20549805 attattagcggtgtcggtgt 20549786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 5409776 - 5409836
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||| |||||    
T  5409776 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 5835353 - 5835273
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||| ||| ||||| |||||||||| |||| ||||| |||  ||||||||||||| || |||||||||||| ||||||||    
T  5835353 acacttctcggattaagcgtgtcccggtatcagacacatgtcatgtctgacaccgacacatataattacactgaattatgt 5835273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 43027409 - 43027469
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| |||||| || |||||||||||||||| | |||||||||||| |||||||||||    
T  43027409 aagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 43027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 33994323 - 33994236
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||| ||||||||  ||||||||||||| || | | ||||| |||| |||||||||||||| |||| ||||| |||| ||||||||||    
T  33994323 cacgaacactccttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacacttgtaattgcactgaattatgtga 33994236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 13770810 - 13770638
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac-----cgatacttataattacacttaattatgtgannnn 195  Q
    ||||||| |||||| || |||||||||||| ||| | |||||||||||| ||||| |||||     ||| |||| |||||||||| |||||||| |        
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgacacgacaacgacacttgtaattacactgaattatgtaatttt 13770711  T
Q  196 nnnaaattattagctgtgtcg--------gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
       ||||||||||||||||||        ||||||||||| |||||||||| || |||| |||||||| ||||    
T  13770710 tttaaattattagctgtgtcggcgtatcagtgtccgtgtcgtgtccgatgtccgagtccatatccgtgtttca 13770638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 21864914 - 21864836
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattat 187  Q
    |||||||||  ||||| ||||||||| | |||||||||||| ||||| |||| ||| |||| |||||||||| ||||||    
T  21864914 acactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattacactaaattat 21864836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 258
Target Start/End: Original strand, 42720876 - 42720994
Alignment:
Q  142 acacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcg--gtgtccgtgtcatgtccgatgtt 239  Q
    |||| ||| ||||| ||||| || || |||||||||| ||||||||||||       ||||||||||| |||||   ||||| |||||||||| |||||     
T  42720876 acacatgttgtgtcagacactgacacatataattacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtcatgtctgatgtc 42720975  T
Q  240 cgtgtccgtatccgtgctt 258  Q
     ||||||||||||||||||    
T  42720976 tgtgtccgtatccgtgctt 42720994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 29763134 - 29763187
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgt 154  Q
    ||||||| ||||||||| |||||||||||||| ||| |||||||||||| ||||    
T  29763134 aagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtgtcgtgt 29763187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 26033398 - 26033458
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    |||| ||||||||| ||||||| ||||| || ||||||||||||||  |||||||||||||    
T  26033398 cacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccga 26033458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 1656686 - 1656631
Alignment:
Q  205 ttagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||| |||||||||||||||||| |||||||| | ||||||| ||||||| |||||    
T  1656686 ttagttgtgtcggtgtccgtgtcgtgtccgatatccgtgtccatatccgtacttca 1656631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 24339767 - 24339704
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    |||||||  |||||||| |||||||||||||||| | ||||| |||||| ||||| ||||||||    
T  24339767 aagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccga 24339704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 7973076 - 7973158
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||||||||  ||||| ||||||||||| ||||||| |||| |||||| ||||| | | || |||||||| | ||||||||||    
T  7973076 acactcctcatattagacgtgtcccgatgtcggacatgtgtcgtgtctcacaccaacatttgtaattacattaaattatgtga 7973158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 27229312 - 27229346
Alignment:
Q  157 gacaccgatacttataattacacttaattatgtga 191  Q
    |||||||||||||||||||||||| ||||||||||    
T  27229312 gacaccgatacttataattacactaaattatgtga 27229346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 21141045 - 21141094
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||| ||||||||| ||| || ||| |||||||||||||||||||||    
T  21141045 gtgtcggcgtccgtgtcgtgtacggtgtccgtgtccgtatccgtgcttca 21141094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 27093366 - 27093484
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    |||||| || ||||||| ||||||   | |||||||| ||| |||||| |||||||  | |||||||||||| ||||||||||       ||||||||||    
T  27093366 acactcatcggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattattag 27093465  T
Q  209 ctgtgtcggtgtccgtgtc 227  Q
    | |||||||| ||| ||||    
T  27093466 cggtgtcggtatccatgtc 27093484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 27184935 - 27184817
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    |||||| || ||||||| ||||||   | |||||||| ||| |||||| |||||||  | |||||||||||| ||||||||||       ||||||||||    
T  27184935 acactcatcggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattattag 27184836  T
Q  209 ctgtgtcggtgtccgtgtc 227  Q
    | |||||||| ||| ||||    
T  27184835 cggtgtcggtatccatgtc 27184817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 32093959 - 32094020
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgt-cccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| ||||||||| |||||||||||| |||| | |||||||||||| ||||| |||||    
T  32093959 aagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacac 32094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 2438664 - 2438828
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| |||||||||||||||| | ||||||| |||| ||||| |||||||| |||| |||||||||| ||||||||||       ||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttgaa 2438763  T
Q  201 attattagctgt------gtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||      ||| ||||||||||  |||||| || ||||||||||||||||||||||    
T  2438764 attattagctgtgtcagcgtcagtgtccgtgttttgtccggtg-tcgtgtccgtatccgtgcttca 2438828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 18840958 - 18841046
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| ||||||||| ||||||| |||||||| | ||||||| |||| |||||||||||||| |||| |||||||||||||||||||    
T  18840958 aagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgt 18841046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 38117104 - 38117259
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| |||| |||| |||||||||||||||| | |||||||||||| ||||| |||||| | |||| |||||||||  || |||||||       ||    
T  38117104 aagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccaacacttgtaattacaccgaagtatgtgattttttcaa 38117203  T
Q  201 attattagctgtgtcg--gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||  ||||| ||||| ||||||      ||||||||||||||||||||    
T  38117204 attattagctgtgtcggcgtgtcagtgtcgtgtccg------gtgtccgtatccgtgcttca 38117259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 28596583 - 28596493
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| ||||||| ||||||   | |||||||||||| ||||| |||||||| ||||||||||||||| | ||||||||    
T  28596583 aagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgacttatgtga 28596493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 37559091 - 37558975
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| ||||| |||||| ||| | ||||||||||||   ||| |||||||| |||| |||||||| | ||||||||||       ||    
T  37559091 aagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatgtgatttttacaa 37558992  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||||||||||||    
T  37558991 attattagctgtgtcgg 37558975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 44860378 - 44860275
Alignment:
Q  157 gacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgc 256  Q
    |||||||| || |||||||||||| ||||||| ||       ||||||||||| ||||| ||||||||||| |||| | ||| ||| |||||||||||||    
T  44860378 gacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtcagtgtccgtgtcgtgtctggtgtacgtatccgtatccgtgc 44860279  T
Q  257 ttca 260  Q
    ||||    
T  44860278 ttca 44860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 26769636 - 26769464
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc-----------tgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| ||||||||| |||||||||||||||  | |||||||||||| |||||           ||||||||| |||| |||||||||   || ||||    
T  26769636 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacatgacaccgacacttgtaattacaccagataatgt 26769537  T
Q  190 gannnnnnnaaattattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||       |||||||||| ||||||||  |||| ||||| |||||| ||| |||||||||||||||||||||    
T  26769536 gatattttcaaattattagttgtgtcggcgtgtctgtgtcgtgtccggtgtccgtgtccgtatccgtgcttca 26769464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 5367288 - 5367216
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||||||||||   ||||| | |||| ||||| |||||||| || |||||||||||| ||||||||||    
T  5367288 gattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacactgaattatgtga 5367216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 6940330 - 6940253
Alignment:
Q  140 ggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg 217  Q
    |||||||||| ||||| || ||||| |||| ||||||||||||||||||| |       |||||||||||||||||||    
T  6940330 ggacacgtgtcgtgtcggataccgacacttgtaattacacttaattatgtaactttttaaaattattagctgtgtcgg 6940253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 15972987 - 15972903
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaatt 185  Q
    ||||||| ||| || || ||||||| ||||||||   |||||||||||| ||||| |||||||| |||| |||||||||| ||||    
T  15972987 aagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaatt 15972903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 5040845 - 5040758
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||| ||||||||  || |||||||||||||   |||||||| ||| ||||| |||||||| |||| |||||||| | ||||||||||    
T  5040845 cacggacactccttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattacattgaattatgtga 5040758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 37419868 - 37419805
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||| ||||||||| |||||||||||||||| | |||||||||  | ||||| ||||||||    
T  37419868 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccga 37419805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 20242712 - 20242762
Alignment:
Q  141 gacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||| ||||| |||||||| || |||||||||||| ||||||||||    
T  20242712 gacacgtgttgtgtccgacaccgacacatataattacactgaattatgtga 20242762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 12224329 - 12224260
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattaca 178  Q
    ||||||||  |||||||||||||||  | |||||||||| | ||||| |||||||| |||| ||||||||    
T  12224329 acactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattaca 12224260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 17124239 - 17124207
Alignment:
Q  157 gacaccgatacttataattacacttaattatgt 189  Q
    ||||||||||| |||||||||||||||||||||    
T  17124239 gacaccgatacatataattacacttaattatgt 17124207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 42511327 - 42511387
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    ||||||| ||||||||| |||||| ||||||||  | |||||||||||| ||||| |||||    
T  42511327 aagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacac 42511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 21191001 - 21191117
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| ||||||||||||||||   |||||||||||| ||||| |||||||| |||| |||||||||| ||||||||||       ||    
T  21191001 aagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa 21191100  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||||||||||||    
T  21191101 attattagctgtgtcgg 21191117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 42893466 - 42893355
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    |||||||||  ||||||||||||| | | |||||||||||| |||||||||||||| |||| ||||||||||  |||||||||       ||||||||||    
T  42893466 acactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactggattatgtgattttttcaaattattag 42893367  T
Q  209 ctgtgtcggtgt 220  Q
    ||||||||||||    
T  42893366 ctgtgtcggtgt 42893355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 43564995 - 43564905
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||| ||| ||||||||||||||||   |||||||| ||| ||||| |||||||| ||||||||||||||| ||||||||||    
T  43564995 aagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatgtga 43564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 21576690 - 21576803
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| |||||||||||||||  | || ||||||||| ||||| |||| ||| |||| |||||||||| ||||||||||       ||    
T  21576690 aagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatgtgattttttcaa 21576789  T
Q  201 attattagctgtgt 214  Q
    ||||||||||||||    
T  21576790 attattagctgtgt 21576803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 26312884 - 26312798
Alignment:
Q  100 taagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaatta 186  Q
    ||||||| |||||||||| ||||||| |||||| | | || ||||||| | ||||| ||||||||||| |||||||||||| |||||    
T  26312884 taagcacatacactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattacactgaatta 26312798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 4105373 - 4105283
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| |||||||||||||||  |||| ||||| | | | |||||| ||| | |||| |||||||||| ||||||||||    
T  4105373 aagcacggacactcctcggattaggcgtgtcccagtatcagacacatatcgagtctgatacctacacttgtaattacactgaattatgtga 4105283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 6471902 - 6471993
Alignment:
Q  169 tataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||| ||||||||||       ||||||||||| ||||| |||||||||||||||||| | |  ||||| ||| ||||||||||    
T  6471902 tataattacactgaattatgtgattttctcaaattattagccgtgtcagtgtccgtgtcatgtccggtttctgtgtctgtaaccgtgcttca 6471993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 14873636 - 14873542
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc-----tgacaccgatacttataattacacttaattatgtg 190  Q
    ||||||| ||||||||| |||||||||||||||| | | |||||||||| | |||     ||||||||| || |||||||||||| |||||||||    
T  14873636 aagcacggacactcctcggattaggcgtgtcccggtgttggacacgtgttgcgtccgacatgacaccgacacatataattacactaaattatgtg 14873542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 21194068 - 21194158
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| ||||||||||| |||| | || |||| |||| |||||  ||||| |||| |||||||||||| ||| ||||||    
T  21194068 aagcacggacactcctcggattaggcgtgccccggtgtctgacatgtgtcgtgtccaacaccaatacctataattacactgaatgatgtga 21194158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 23016054 - 23016103
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||| ||||||  || |||||||||||||||||||||    
T  23016054 gtgtcggtgtccgtgtcgtgtccggagtccgtgtccgtatccgtgcttca 23016103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 19453119 - 19453170
Alignment:
Q  209 ctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||| ||||||||||||| ||| ||||||||| | |||||||||    
T  19453119 ctgtgtcggtgttcgtgtcatgtccggtgtccgtgtccgttttcgtgcttca 19453170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 19820333 - 19820376
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggaca 144  Q
    ||||||| |||||||||||||||||||||||||| | |||||||    
T  19820333 aagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 35017157 - 35017110
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtg 148  Q
    ||||||| ||||||||| |||||||||||||||||| | |||||||||    
T  35017157 aagcacggacactcctcggattaggcgtgtcccgatgttggacacgtg 35017110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 6770540 - 6770490
Alignment:
Q  210 tgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||| ||||||||||||||| || ||| ||| |||||||||||||||||    
T  6770540 tgtgtcagtgtccgtgtcatgttcggtgtccgtatccgtatccgtgcttca 6770490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 15382466 - 15382424
Alignment:
Q  218 tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| |||||| ||| |||||||||||||||||||||    
T  15382466 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttca 15382424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 30502333 - 30502423
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||| ||||  |||||||| ||||||  | ||||||| |||| ||||| |||||||| || |||||||||||| ||||| ||||    
T  30502333 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtga 30502423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 30542676 - 30542766
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||| ||||  |||||||| ||||||  | ||||||| |||| ||||| |||||||| || |||||||||||| ||||| ||||    
T  30542676 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtga 30542766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 6401494 - 6401445
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||||||||  ||||| ||| |||||| ||||||||||||||    
T  6401494 gtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatccgtgcttca 6401445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 13287468 - 13287509
Alignment:
Q  217 gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgctt 258  Q
    ||||||||||| |||||| ||| |||||||||||||||||||    
T  13287468 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 13287509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 21522746 - 21522697
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||| ||||||||||| |||||| ||  |||||||||||||||||||||    
T  21522746 gtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttca 21522697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 21533312 - 21533263
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||| ||||||||||| |||||| ||  |||||||||||||||||||||    
T  21533312 gtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtgcttca 21533263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 31084439 - 31084321
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac-----cgatacttataattacacttaattatgtgannnnnnn 198  Q
    |||| ||||||||| |||||||| ||||||  | |||||||||||| ||||| |||||     ||| |||| |||||||| | ||||||||||           
T  31084439 cacggacactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacacgacatcgacacttgtaattacattgaattatgtgattttttc 31084340  T
Q  199 aaattattagctgtgtcgg 217  Q
    |||||||||||||||||||    
T  31084339 aaattattagctgtgtcgg 31084321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 32766986 - 32767047
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||| ||||||||||||||||| |||||  |||  ||||  ||||||||||||||    
T  32766986 aaattattagcggtgtcggtgtccgtgtcgtgtccagtgtctgtgtttgtatccgtgcttca 32767047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 17088402 - 17088358
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtg 148  Q
    |||| ||||||||| |||||||||||||||| | |||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggacacgtg 17088358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 20683370 - 20683330
Alignment:
Q  218 tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgctt 258  Q
    |||||||||| |||||| ||| |||||||||||||||||||    
T  20683370 tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 20683330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 27932341 - 27932261
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    |||||||||  ||||||||||||| | | || ||||||||| ||||| |||||| | | || |||||||||| ||||||||    
T  27932341 acactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgt 27932261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 55401189 - 55401073
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| ||||||||||||| || | |||||||||||| ||||| |||||||| |||| |||||||||| ||||||||||       ||    
T  55401189 aagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaa 55401090  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||| ||||||||    
T  55401089 attattagttgtgtcgg 55401073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 40993288 - 40993370
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||| |||||||||||||||| | ||||||| |||| ||||| |||||||| || |||||||||||| ||||||||||    
T  40993288 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtga 40993370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 14028018 - 14027962
Alignment:
Q  204 attagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  14028018 attagctgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttca 14027962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 27505365 - 27505244
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc-----tgacaccgatacttataattacacttaattatgtgannnn 195  Q
    ||||||| ||||||||| |||||||| ||||||| | |||||||||||| |||||      |||||||| |||| |||||||||||||||||||||        
T  27505365 aagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacacgacaccgacacttgtaattacacttaattatgtgatttt 27505266  T
Q  196 nnnaaattattagctgtgtcgg 217  Q
       |||||||||||||||||||    
T  27505265 taaaaattattagctgtgtcgg 27505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 11252082 - 11252002
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||| |||||||||||| |||||  ||||||||||| |||||||||||||| ||  ||||||||||| ||||||||||    
T  11252082 acactcctcggattaggcgtgttccgatgccggacacgtgttgtgtctgacaccgacac--ataattacactgaattatgtga 11252002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 10955056 - 10954950
Alignment:
Q  111 actcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagct 210  Q
    ||||||| |||||||||||||||  | |||||||||||| ||||| |||||||| |||| | |||||||| ||||||||||       |||||||||| |    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagtt 10954957  T
Q  211 gtgtcgg 217  Q
    |||||||    
T  10954956 gtgtcgg 10954950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 20503579 - 20503491
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| ||||||||| |||||||||||||||| | || |||| |||| |||||  ||||||| |||| |||||||||| ||||||||    
T  20503579 aagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgt 20503491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 8842443 - 8842353
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| ||||||||||||| | |||||  ||| |||| |||||||||||||| |  |||||||||||  ||||||||||    
T  8842443 aagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtcgtgtctgacaccgacatatataattacaccaaattatgtga 8842353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 11313813 - 11313904
Alignment:
Q  169 tataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||| ||||||||||       ||||||||||| ||||||||||| || || | |||  |||||||||||||||||||||||||    
T  11313813 tataattacactaaattatgtgattttctcaaattattagcagtgtcggtgtctgtttcgtctcccgtgttcgtgtccgtatccgtgcttca 11313904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 25775621 - 25775533
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| |||||||||||||| | | ||||||||  |  ||||| |||||||| |||| |||||||||| ||||||||||    
T  25775621 aagcacgaacactcctcggattaggcgtgtcctggtgtcggacac--gacgtgtccgacaccgacacttgtaattacactgaattatgtga 25775533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 28918109 - 28917999
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc--tgacaccgatacttataattacacttaattatgtgannnnnnnaaattatt 206  Q
    ||||||||  |||||||||||||||  | |||||||||||| |||||   |||||||| |||| |||||||||| ||||||||||       ||||||||    
T  28918109 acactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgattttttcaaattatt 28918010  T
Q  207 agctgtgtcgg 217  Q
    |||| ||||||    
T  28918009 agctatgtcgg 28917999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 11610623 - 11610578
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacg 146  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||    
T  11610623 aagcacggacactcctcagattaggcgtgtcccgatgtcggacacg 11610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 21479176 - 21479071
Alignment:
Q  157 gacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtgtccgtatccgt 254  Q
    |||||||| |||  |||||||||| |||| |||||       |||||||||||||||||||  |||| ||||| |||||| ||| ||||||||||||| |    
T  21479176 gacaccgacactagtaattacactgaattgtgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgtccgtatccat 21479077  T
Q  255 gcttca 260  Q
    ||||||    
T  21479076 gcttca 21479071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 3631796 - 3631708
Alignment:
Q  103 gcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||| ||||||||| || ||||||||||| | | ||||||| |||| ||||| ||||| |  || |||||||||||| ||||||||||    
T  3631796 gcacggacactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacactggcacatataattacactgaattatgtga 3631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 14747577 - 14747514
Alignment:
Q  199 aaattattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||||||||||  |||| ||||| |||||| ||| ||| |||||||||||||||||    
T  14747577 aaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtatccgtatccgtgcttca 14747514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 23657835 - 23657767
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattat 187  Q
    ||||||| |||||||| |||||||||  |||  |||| |||||||||| ||||||||||||| ||||||    
T  23657835 gattaggtgtgtcccggtatcggacaaatgtcatgtccgacaccgatatttataattacactgaattat 23657767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 750688 - 750731
Alignment:
Q  217 gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||    
T  750688 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttca 750731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 4987233 - 4987288
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||||| |||||||||||||||| | |||||||||||| |||||  |||||||    
T  4987233 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccga 4987288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 7171608 - 7171537
Alignment:
Q  108 tacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacac 179  Q
    |||||||||  ||||||||||||| || | |||||||||||| ||||| |||||| | |||| |||||||||    
T  7171608 tacactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattacac 7171537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 18427060 - 18426973
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||| ||||||||| ||||||| |||||||| |  ||||||||||| || || |||||||| |  |||||||||||  ||||||||||    
T  18427060 cacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacaccgaattatgtga 18426973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 34307849 - 34307892
Alignment:
Q  217 gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||    
T  34307849 gtgtctgtgtcatgtccggtgttcgtgtccgtatccatgcttca 34307892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 51206348 - 51206424
Alignment:
Q  151 gtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtc 227  Q
    ||||| |||||||| |||| || ||||||| ||||||||||       ||||||||||||||||| |||||||||||    
T  51206348 gtgtccgacaccgacacttgtatttacactgaattatgtgattttttcaaattattagctgtgtcagtgtccgtgtc 51206424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 7614428 - 7614519
Alignment:
Q  169 tataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||| ||| ||||||||||       ||||||||| ||||||||||||| ||||| | || ||| || ||||||||||||||| ||||    
T  7614428 tataattatactgaattatgtgattttcttaaattattaactgtgtcggtgtctgtgtcgtatctgatatttgtgtccgtatccgtgtttca 7614519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 7928514 - 7928432
Alignment:
Q  151 gtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtcatgtccg 234  Q
    ||||| |||||||| || |||||||||||| ||||||||||       ||||||||||| |||||||||| | |||||||||||    
T  7928514 gtgtccgacaccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcggtgt-cttgtcatgtccg 7928432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 40052426 - 40052380
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgt 147  Q
    ||||||| ||||||||| |||||||||||||||| | ||||||||||    
T  40052426 aagcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 8789493 - 8789585
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggaca--cgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||| ||||||||| ||||||||||||| || | || ||||   |||| ||||| |||||||| || |||||||||||  ||||||||||    
T  8789493 aagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacacatataattacacggaattatgtga 8789585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10318103 - 10318152
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||| ||||||||||| |||||| ||| ||||| |||||||||||||||    
T  10318103 gtgtccgtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttca 10318152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 10335349 - 10335398
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||| ||||||||||| |||||| ||| ||||| |||||||||||||||    
T  10335349 gtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttca 10335398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 24204986 - 24205074
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgt-agtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| |||||||||  ||||||||||||| | | ||||||||| || |||||| |||| ||| |||||||||||||||  |||||||    
T  24204986 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgaca-cgacacttataattacactgtattatgt 24205074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 32400748 - 32400806
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtca-tgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||||    |||||||| |||||| ||||||||||||||||| |||||||    
T  32400748 aaattattagctgtgtcg----ccgtgtcagtgtccggtgttcgtgtccgtatccatgcttca 32400806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 1509597 - 1509532
Alignment:
Q  157 gacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtcc 222  Q
    |||||||| |||| |||||||||| ||||||||||       ||||||||||||||||| ||||||    
T  1509597 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcagtgtcc 1509532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 34185057 - 34185101
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacac 145  Q
    ||||||| ||||||||| |||||||||||||||| | ||||||||    
T  34185057 aagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 8912 - 8745
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| | ||||||| ||||||||||||| || | |||||||||||| ||||| |||||||| |||| |||||||||| ||| || |||       ||    
T  8912 aagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatgattttttcaa 8813  T
Q  201 attattagctgtgtcg--------gtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||        ||||||||||| |||||| ||| ||||||||||||| |||||||    
T  8812 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttca 8745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 5813706 - 5813578
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| |||||||||  ||||||||||||||| | |||||||||||| ||||| |||||||| |||| || ||||||| || |||||||       ||    
T  5813706 aagcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacactaaaatatgtgactttttcaa 5813607  T
Q  201 attattagctgtgtcg--gtgtccgtgtc 227  Q
    ||||||||||||||||  |||||||||||    
T  5813606 attattagctgtgtcggcgtgtccgtgtc 5813578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 8343073 - 8342939
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    |||||| || |||||||||||||||| | |||||||| ||||      |||||||| |||| |||||||||| ||||||||||       ||||||||||    
T  8343073 acactcttcggattaggcgtgtcccggtgtcggacacatgtac-----gacaccgacacttgtaattacactaaattatgtgattttttcaaattattag 8342979  T
Q  209 ctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgt 248  Q
    || |||||||||| ||||| |||||||||| |||||||||    
T  8342978 ctatgtcggtgtcagtgtcgtgtccgatgtccgtgtccgt 8342939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 20679348 - 20679430
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||| | | |||||||||||| | |||||||||||| | |||||||||||| ||||||||||||||| || |||||||    
T  20679348 acactcctcggttaaggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtga 20679430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 31557092 - 31557020
Alignment:
Q  119 gattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||||||||||||| | | ||||||| |||| |||||||||||||| |||| |||||||||| ||||||||||    
T  31557092 gattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaattatgtga 31557020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 12570443 - 12570509
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatac 167  Q
    ||||||| ||| || || |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  12570443 aagcacggacaatcttcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgatac 12570509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 12570669 - 12570735
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatac 167  Q
    ||||||| ||| || || |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  12570669 aagcacggacaatcttcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgatac 12570735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 3025665 - 3025540
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| ||||||||| |||||| |||||| |  | || ||||||||| ||||| ||||| || || |||||||||||| ||||||||||       ||    
T  3025665 aagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaattatgtgattttctcaa 3025566  T
Q  201 attattagctgtgtcggtgtccgtgt 226  Q
    |||||||||  || ||||||||||||    
T  3025565 attattagcaatgccggtgtccgtgt 3025540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 25566899 - 25566822
Alignment:
Q  157 gacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgtccgtgtcatgtccg 234  Q
    |||||||| |||| |||||||||| ||||||||||       ||||||||||||||||| ||||| ||||||||||||    
T  25566899 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagtgtctgtgtcatgtccg 25566822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 926733 - 926812
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacact 180  Q
    ||||||| ||||||||| ||| | || ||||||| | |||||||||||| | ||| |||||||| |||||||||||||||    
T  926733 aagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattacact 926812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 3951586 - 3951641
Alignment:
Q  205 ttagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||||||||||||||||||||| | || | ||| |||||||||||||||||||||    
T  3951586 ttagctgtgtcggtgtccgtgtcgtatctggtgtccgtgtccgtatccgtgcttca 3951641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 9414840 - 9414910
Alignment:
Q  120 attaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||||||||||  ||| |||||||||||| |||||||||||| | |||||||||| |||| ||||||||||    
T  9414840 attaggcgtgtcttgat-tcggacacgtgtcgtgtctgacaccaacacttataattgcactgaattatgtga 9414910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 14134810 - 14134723
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    |||| |||||||||  ||||||||||||| | |  ||||||||||| |||| ||||||||| |  |||||||||||| ||||||||||    
T  14134810 cacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtga 14134723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 36450707 - 36450815
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    ||||||||| |||||||||||||| | | ||||||||| || ||||| |||||| | |||| |||||||||| |||| |||||       ||||||||||    
T  36450707 acactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaattctgtgattttttcaaattattag 36450806  T
Q  209 ctgtgtcgg 217  Q
     ||||||||    
T  36450807 ttgtgtcgg 36450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 43737875 - 43737925
Alignment:
Q  210 tgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||||||||| |||||| ||| |||||| ||||||||||||||    
T  43737875 tgtgtcggtgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttca 43737925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 20873157 - 20873093
Alignment:
Q  127 gtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtga 191  Q
    ||||| || |||||||||||| | ||||| |||||||| |||| |||||||||| ||||||||||    
T  20873157 gtgtctcggtatcggacacgtatcgtgtccgacaccgacacttgtaattacactaaattatgtga 20873093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 18407833 - 18407717
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||| |||||||||  |||||||||||||   | ||||||| |||| ||||| | || ||| |||| |||||||||| ||||||||||        |    
T  18407833 aagcacggacactcctccaattaggcgtgtcctagtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacactgaattatgtgatttttttga 18407734  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||||||||||||    
T  18407733 attattagctgtgtcgg 18407717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 24613584 - 24613516
Alignment:
Q  151 gtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcggtgt 220  Q
    ||||| |||||||| |||| |||||||||||||||||||||       ||||||||||||||||||||||    
T  24613584 gtgtccgacaccgacacttgtaattacacttaattatgtga-tttttcaaattattagctgtgtcggtgt 24613516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 29447569 - 29447506
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||| ||||||||| |||||| | ||||||| | |||||||| ||| ||||||||||||||    
T  29447569 aagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccga 29447506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 22943302 - 22943348
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtc 155  Q
    ||||||||| |||||||||||||||| | |||||||||||| |||||    
T  22943302 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtc 22943348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 24857998 - 24857956
Alignment:
Q  218 tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| |||||| ||||||||||||||||||| |||||    
T  24857998 tgtccgtgtcgtgtccggtgttcgtgtccgtatccgttcttca 24857956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 926851 - 926900
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    ||||| ||||||||||| |||||| ||| ||||| |||||||||||||||    
T  926851 gtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatccgtgcttca 926900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 16642017 - 16642078
Alignment:
Q  199 aaattattagctgtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| |||||| ||||| ||||| ||||||  || ||| |||||||||||||||||    
T  16642017 aaattattagttgtgtcagtgtctgtgtcgtgtccggcgtccgtatccgtatccgtgcttca 16642078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 4298842 - 4298947
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattag 208  Q
    ||||||||| |||||||||||||||| | ||| ||||||||    ||||||||||| |||| |||||||| | ||||||||||       |||||||||     
T  4298842 acactcctcagattaggcgtgtcccg-tgtcgaacacgtgt--catctgacaccgacacttgtaattacattaaattatgtgattttttcaaattattaa 4298938  T
Q  209 ctgtgtcgg 217  Q
    |||||||||    
T  4298939 ctgtgtcgg 4298947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 8343433 - 8343381
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacac 161  Q
    |||||| || |||||||||||||||| | |||||||||||| ||||| |||||    
T  8343433 acactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacac 8343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 13844590 - 13844674
Alignment:
Q  150 agtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaaattattagctgtgtcg--gtgtccgtgtcatgtc 232  Q
    |||||| |||||||| || |||||||||||| ||||||||||       ||||||||||| ||||||  ||||||||||| ||||    
T  13844590 agtgtccgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtc 13844674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 24413504 - 24413592
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| ||||| ||| |||||| ||||||||| | | |||||||  | ||||| ||||| || |||||||||||| || ||||||||    
T  24413504 aagcacggacacttctcggattagacgtgtcccgctgttggacacgcatcgtgtccgacactgacacttataattaccctgaattatgt 24413592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 24413624 - 24413672
Alignment:
Q  212 tgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||| ||||||||||| |||| | ||| |||||||||||||||||||||    
T  24413624 tgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtatccgtgcttca 24413672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 33405330 - 33405418
Alignment:
Q  102 agcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtg 190  Q
    |||||| |||||| |  |||||| ||||||| | | || |||| |||| ||||| |||||||| || |||||||||||| |||||||||    
T  33405330 agcacggacactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtg 33405418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 70392 - 70304
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||| |||||| || |||||||| ||||| | | |||||||||||| ||||| |||||||| ||||||||||||||| ||||||||    
T  70392 aagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgt 70304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 14641 - 14528
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnnaa 200  Q
    ||||||||||||||||  ||||||||||||| || | |||||||||||| ||||| ||||||   |||| |||||||||| ||||||||||       ||    
T  14641 aagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacacc---acttgtaattacactgaattatgtgattttttcaa 14545  T
Q  201 attattagctgtgtcgg 217  Q
    |||||||| ||||||||    
T  14544 attattagttgtgtcgg 14528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 46671 - 46629
Alignment:
Q  218 tgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  46671 tgtccgtgtcgtgtccgatgtccgtgtccgtatccgtgcttca 46629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 4989 - 5058
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattaca 178  Q
    ||||||||| |||||||| |||| | || |||||||||||| ||||| |||||||| |||| ||||||||    
T  4989 acactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 9894 - 9845
Alignment:
Q  211 gtgtcggtgtccgtgtcatgtccgatgttcgtgtccgtatccgtgcttca 260  Q
    |||||||||||| |||| |||||| ||| |||||||||||||||||||||    
T  9894 gtgtcggtgtccatgtcgtgtccggtgtccgtgtccgtatccgtgcttca 9845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 241719 - 241658
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacacc 162  Q
    ||||||| ||||| ||| |||||||||||||||| | |||||||||||| ||||| ||||||    
T  241719 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacc 241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 45475 - 45563
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgt 189  Q
    ||||||||||| || |  |||||||| |||| || | || ||||||||| ||||| |||||||| |||| |||||||||| ||||||||    
T  45475 aagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgt 45563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 263309 - 263369
Alignment:
Q  104 cacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    |||| ||||||||| |||||||||||||  | ||||| |||||||| ||||||||||||||    
T  263309 cacggacactcctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccga 263369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 8125 - 7971
Alignment:
Q  99 ttaagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaattatgtgannnnnnn 198  Q
    ||||||||| |||| | || ||||||| |||| | ||||||| |||  ||| ||||| |||||||| |||| ||||||||||  ||||| |||           
T  8125 ttaagcacgaacacccttcggattaggtgtgttctgatatcgaacatatgtcgtgtccgacaccgacactt-taattacactgtattatatgattttttc 8027  T
Q  199 aaattattagctgtgtcgg--tgtccgtgtcatgtccgatgttcgtgtccgtatcc 252  Q
    |||||||||| ||||||||  |||| || || |||||||||||||||| |||||||    
T  8026 aaattattagttgtgtcggcgtgtctgtatcgtgtccgatgttcgtgttcgtatcc 7971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 71842 - 71787
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    ||||||||| |||||| ||||||||| | |||||||||||| ||||| ||||||||    
T  71842 acactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccga 71787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 4826 - 4948
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgt--ctgacaccgatacttataattacacttaattatgtga-nnnnnn 197  Q
    ||||||| ||||||||| |||||||||||||||  | ||||||| |||| ||||    |||||| | |||| |||||||||| ||||||||||           
T  4826 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgattttttt 4925  T
Q  198 naaattattagctgtgtcggtgt 220  Q
     ||||||||||||||||||||||    
T  4926 taaattattagctgtgtcggtgt 4948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 3052 - 2990
Alignment:
Q  102 agcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccga 164  Q
    |||||| ||||||||| |||||||||||| ||| | ||| |||||||| |||||||| |||||    
T  3052 agcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccga 2990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 3791 - 3844
Alignment:
Q  109 acactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacacc 162  Q
    ||||||||| ||||||||||||| |||| ||||||| |||| ||||| ||||||    
T  3791 acactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacacc 3844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 9681 - 9742
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacacc 162  Q
    ||||||| ||||||||| |||||  ||||||||||| || |||| |||| ||||||||||||    
T  9681 aagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacacc 9742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 3422 - 3338
Alignment:
Q  101 aagcacgtacactcctctgattaggcgtgtcccgatatcggacacgtgtagtgtctgacaccgatacttataattacacttaatt 185  Q
    ||||||| ||||||||| |||||||||||||||  | ||   |||||||  |||| ||||| || |||| |||||||||||||||    
T  3422 aagcacggacactcctcggattaggcgtgtcccagtgtccaccacgtgtcttgtccgacactgacacttgtaattacacttaatt 3338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University