View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_46 (Length: 424)
Name: NF16533_low_46
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 146 - 293
Target Start/End: Original strand, 17024907 - 17025054
Alignment:
| Q |
146 |
gcttaaaattaggtttggtttgtaatattttgtggcttcgtggattatttaatgtaataatatttgattggtttaacaaaattcaagtgaatttttcgtt |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
17024907 |
gcttaaaattaggtttggtttgtaatagtttgtggcttcgtggattatttaatgtaataatatttgatcggtttaacaaaattcaagtgaatttctcgtt |
17025006 |
T |
|
| Q |
246 |
cgatttgaatttcttgtatatattgtttagcttgttatcattgacatt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17025007 |
cgatttgaatttcttgtatatattgtttagcttgttatcattgacatt |
17025054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 17024595 - 17024700
Alignment:
| Q |
18 |
ctctttgggtgataaagcacgaaatttggaaagaaatgagaatgattaagagggaaatttgcggaatagataaagtgaattgagcaaagaagatgaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17024595 |
ctctttgggtgataaagcacgaaatttggaaagaaatgggaatgattaagagggaaaattgcggaatagataaagtgaatttagcaaagaagatgaaaag |
17024694 |
T |
|
| Q |
118 |
agtgga |
123 |
Q |
| |
|
|||||| |
|
|
| T |
17024695 |
agtgga |
17024700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 408
Target Start/End: Original strand, 17025044 - 17025142
Alignment:
| Q |
310 |
tcattgacattcgtcgcacaaaatcc-atcaataacttttcataagaattttaaatccacttttcacnnnnnnnngtaggggaaaagctattaaccccca |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17025044 |
tcattgacattcgtcgcacaaaatcccatcaataacttttcaaaagaattttaaatccacttttcacattttttt-taggggaaaagctattaaccccca |
17025142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 20901550 - 20901457
Alignment:
| Q |
200 |
taataatatttgattggtttaacaaaattcaagtgaatttttcgttcgatttgaatttcttgtatatattgtttagcttgttatcattgacatt |
293 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||| | ||||||||||| |||||||||| |||| |
|
|
| T |
20901550 |
taataatatttgattactttaacacaattcaagtgaatttctcgttcgatttgaattgcttgtacacattgtttagctagttatcattgtcatt |
20901457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University