View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_47 (Length: 423)
Name: NF16533_low_47
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 5016250 - 5016609
Alignment:
| Q |
20 |
tgataaagatggaaatgcaatgcacataagtagccattccccatgtgaagttacaacttacaatacaagcaccagagacaaaatctaaaacaacactttg |
119 |
Q |
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| T |
5016250 |
tgataaagatggaaatgcaatgcacataagtagccattccccatgtgaagttacaacttacaatacaagcaccagagacaaaatctaaaacaacactt-g |
5016348 |
T |
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| Q |
120 |
agtatccaaccaagtagtcacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaacccttaatgcttgaattcacagtttgcca |
219 |
Q |
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| T |
5016349 |
agtatccaaccaagtagtcacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaaccctta-tgcttgaattcacagtttgcca |
5016447 |
T |
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| Q |
220 |
ccaattggctatacttcactctaggttataattgtaacactcgtaccttatatgaatatccctcactatggaaatcaagaacaaggataagaatcacgaa |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5016448 |
ccaattggctatacttcactctaggttatagttgtaacactcgtaccttatacgaatatccctcactatggaaaccaagaacaaggataagaatcacgaa |
5016547 |
T |
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| Q |
320 |
cccctggtattttattttatttttgtgttatttctaccaatatgttcaatcttctatttctt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5016548 |
cccctggtattttattttatttttgtgttatttctaccaatatgttcaattttctatttctt |
5016609 |
T |
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