View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_49 (Length: 418)

Name: NF16533_low_49
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_49
NF16533_low_49
[»] chr1 (7 HSPs)
chr1 (44-212)||(21899187-21899355)
chr1 (13-206)||(17663386-17663579)
chr1 (13-206)||(17700400-17700593)
chr1 (289-391)||(17699894-17699996)
chr1 (291-390)||(17663968-17664067)
chr1 (13-49)||(21899653-21899689)
chr1 (150-206)||(22663717-22663773)
[»] chr8 (2 HSPs)
chr8 (68-194)||(44989761-44989884)
chr8 (60-111)||(44989252-44989303)
[»] chr4 (1 HSPs)
chr4 (71-206)||(51220073-51220204)
[»] chr7 (1 HSPs)
chr7 (50-130)||(441040-441120)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 21899355 - 21899187
Alignment:
Q  44 gtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctct 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||| |||| || ||||    
T  21899355 gtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcctaaagacaagattttacaaaaatcgcaagattgcaaggaacctgtagactct 21899256  T
Q  144 aaccgtgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtttctatg 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21899255 aaccatgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtttctatg 21899187  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 17663386 - 17663579
Alignment:
Q  13 agatgaaggaacaaggtgtgctgctaacaaggtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaa 112  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||| |||||| ||||     
T  17663386 agatgaaggaacaaggtgtgcttctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaac 17663485  T
Q  113 gtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtt 206  Q
     |||||||||| |||||| || ||||||||||||| |||||||||||||| ||| ||  ||||||||| |||||||||||||||||||||||||    
T  17663486 atcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagcgaagatgaaaccgaattagggtcaagagtt 17663579  T

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Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 17700593 - 17700400
Alignment:
Q  13 agatgaaggaacaaggtgtgctgctaacaaggtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaa 112  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||| |||||| ||||     
T  17700593 agatgaaggaacaaggtgtgcttctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaac 17700494  T
Q  113 gtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtt 206  Q
     |||||||||| |||||| || ||||||||||||| |||||||||||||| ||| ||  ||||| ||| |||||||||||||||||||||||||    
T  17700493 atcacaagattccaaggaaccagcaggctctaaccttgatattgaaggcatgaagaatgttagctaagatgaaaccgaattagggtcaagagtt 17700400  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 289 - 391
Target Start/End: Complemental strand, 17699996 - 17699894
Alignment:
Q  289 taataataattggtcttttatttagttgagttgaatgcagaatattttatcttatcactatcattttttggaactttcaatggtggaatctatttttgtg 388  Q
    ||||||||||||| |||||||||  |||| ||||||| |||  | |||||||||||||||| ||  ||||||||||||| |||||||||||| |||||||    
T  17699996 taataataattgggcttttatttgattgatttgaatgtagaggaatttatcttatcactattatggtttggaactttcagtggtggaatctacttttgtg 17699897  T
Q  389 aat 391  Q
    |||    
T  17699896 aat 17699894  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 390
Target Start/End: Original strand, 17663968 - 17664067
Alignment:
Q  291 ataataattggtcttttatttagttgagttgaatgcagaatattttatcttatcactatcattttttggaactttcaatggtggaatctatttttgtgaa 390  Q
    |||||||||||||||||||||  |||| |||||||||||   ||||||||||||||||| ||  ||  ||||||||| ||||||||| ||||||||||||    
T  17663968 ataataattggtcttttatttgattgatttgaatgcagaggtttttatcttatcactattatggttacgaactttcagtggtggaatttatttttgtgaa 17664067  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 21899689 - 21899653
Alignment:
Q  13 agatgaaggaacaaggtgtgctgctaacaaggtgtgt 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  21899689 agatgaaggaacaaggtgtgctgctaacaaggtgtgt 21899653  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 22663773 - 22663717
Alignment:
Q  150 gatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtt 206  Q
    ||||||||||  ||||| || || | ||||||||||||||||||||||||| |||||    
T  22663773 gatattgaagaaaagaagaaaatcaacgaaggtgaaaccgaattagggtcaggagtt 22663717  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 44989884 - 44989761
Alignment:
Q  68 cttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaa 167  Q
    ||||||| ||||| |||| | ||| ||||| |||||||| | ||  ||||||||||||||||| |||| ||||||||| | ||||||||||    ||||     
T  44989884 cttggtgctgaggctgaataatcctaaagagaagatttttctaacatcacaagattgcaaggaacctgaaggctctaatcatgatattgaa---tagaag 44989788  T
Q  168 aagattagcgaaggtgaaaccgaatta 194  Q
    ||||||| ||||||||||||| |||||    
T  44989787 aagattaacgaaggtgaaaccaaatta 44989761  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 44989252 - 44989303
Alignment:
Q  60 gaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaa 111  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||    
T  44989252 gaaaacaacttggtgttgaggttgaagaatcctaaagacaagatttttcaaa 44989303  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 51220204 - 51220073
Alignment:
Q  71 ggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaag 170  Q
    |||||||||||| |||||||| |||||| ||||||| ||||  ||||||||||||||||| | ||    ||||||   |||||||||||   |||| |||    
T  51220204 ggtgttgaggttcaagattcctaaagac-agatttttcaaacatcacaagattgcaaggaacatgactcctctaataatgatattgaag---agaagaag 51220109  T
Q  171 attagcgaaggtgaaaccgaattagggtcaagagtt 206  Q
    |||| |||| ||||||| ||||||||||||| ||||    
T  51220108 attaacgaaagtgaaactgaattagggtcaatagtt 51220073  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 441120 - 441040
Alignment:
Q  50 ttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaagga 130  Q
    ||||| ||| |||||||| |||| ||||||||| || ||||| ||||  |||||||| ||||  |||||||||||||||||    
T  441120 ttgccacaatgaaaagaagttggcgttgaggttcaaaattcctaaaggtaagatttttcaaacatcacaagattgcaagga 441040  T

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