View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_50 (Length: 412)
Name: NF16533_low_50
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 155 - 402
Target Start/End: Original strand, 21193383 - 21193630
Alignment:
| Q |
155 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193383 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
21193482 |
T |
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| Q |
255 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacnnnnn |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193483 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacttttt |
21193582 |
T |
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| Q |
355 |
nnncttctcttttgaaactgtccatgttagtattgttagtagtattat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193583 |
tttcttctcttttgaaactgtccatgttagtattgttagtagtattat |
21193630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 155 - 402
Target Start/End: Original strand, 27249156 - 27249403
Alignment:
| Q |
155 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249156 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
27249255 |
T |
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| Q |
255 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacnnnnn |
354 |
Q |
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| T |
27249256 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacttttt |
27249355 |
T |
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| Q |
355 |
nnncttctcttttgaaactgtccatgttagtattgttagtagtattat |
402 |
Q |
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| T |
27249356 |
tttcttctcttttgaaactgtccatgttagtattgttagtagtattat |
27249403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 21193217 - 21193344
Alignment:
| Q |
1 |
tcaagtgaagataggtgagctcacactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193217 |
tcaagtgaagataggtgagctcacactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagaga |
21193316 |
T |
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| Q |
101 |
ttgttgtttgagataagattatagtgtt |
128 |
Q |
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| T |
21193317 |
ttgttgtttgagataagattatagtgtt |
21193344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27249010 - 27249137
Alignment:
| Q |
1 |
tcaagtgaagataggtgagctcacactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249010 |
tcaagtgaagataggtgagctcacactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagaga |
27249109 |
T |
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| Q |
101 |
ttgttgtttgagataagattatagtgtt |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27249110 |
ttgttgtttgagataagattatagtgtt |
27249137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 27261052 - 27261231
Alignment:
| Q |
163 |
atggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttcttctatgt |
262 |
Q |
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||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||| || |
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| T |
27261052 |
atggcatctgcatcagcatctctcttcaagtcatcaattgttcttgacaagtctgaatgggtgaagggccaaac---cctccgtcaa---tcttcggtgg |
27261145 |
T |
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| Q |
263 |
ctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggta |
348 |
Q |
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| T |
27261146 |
ccgctgtacgatgcaaccccgccgctccatcaagtctcactatcagagctggttcctatgccaatgagctcgttaagaccgcggta |
27261231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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