View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_51 (Length: 409)
Name: NF16533_low_51
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 276 - 377
Target Start/End: Complemental strand, 29529081 - 29528980
Alignment:
| Q |
276 |
gacgtggaaactagttgggcttatgtcaagtgtagttggcctgttatgtcatgctctgagcccttctttcaatcgattaattggaaggtggaaacctttc |
375 |
Q |
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| T |
29529081 |
gacgtggagagtagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaaggtggaaacctttc |
29528982 |
T |
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| Q |
376 |
aa |
377 |
Q |
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| T |
29528981 |
aa |
29528980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 256 - 394
Target Start/End: Original strand, 28183514 - 28183652
Alignment:
| Q |
256 |
agggtatttcatgccaagacgacgtggaaactagttgggcttatgtcaagtgtagttggcctgttatgtcatgctctgagcccttctttcaatcgattaa |
355 |
Q |
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| T |
28183514 |
agggtgtttcaagccgagacgacttggagagtaattggttttatgtcatgtattgttggcttgttatgttatgctctaagcccttctttcaatcgattat |
28183613 |
T |
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| Q |
356 |
ttggaaggtggaaacctttcaatgtctttttatatgtag |
394 |
Q |
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| T |
28183614 |
ttggaaggtggaatcctttcaaggtctttctctatgtag |
28183652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 29612391 - 29612479
Alignment:
| Q |
280 |
tggaaactagttgggcttatgtcaagtgtagttggcctgttatgtcatgctctgagcccttctttcaatcgattaattggaaggtggaa |
368 |
Q |
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| T |
29612391 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaa |
29612479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 29475394 - 29475320
Alignment:
| Q |
287 |
tagttgggcttatgtcaagtgtagttggcctgttatgtcatgctctgagcccttctttcaatcgattaattggaa |
361 |
Q |
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| T |
29475394 |
tagttggccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaa |
29475320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 395
Target Start/End: Complemental strand, 29527044 - 29526960
Alignment:
| Q |
311 |
ttggcctgttatgtcatgctctgagcccttctttcaatcgattaattggaaggtggaaacctttcaatgtctttttatatgtagt |
395 |
Q |
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| T |
29527044 |
ttggcttgttaagttatgctctaggcccttctttcaatcgattatttggaaggtggaatcctttcaaggtctttctctatgtagt |
29526960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 29524621 - 29524683
Alignment:
| Q |
299 |
tgtcaagtgtagttggcctgttatgtcatgctctgagcccttctttcaatcgattaattggaa |
361 |
Q |
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| T |
29524621 |
tgtcaagtgtagtaggcctattatgtaatgctcagagccattctttcaatcgtttcattggaa |
29524683 |
T |
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