View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_52 (Length: 399)
Name: NF16533_low_52
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 383
Target Start/End: Original strand, 33071337 - 33071711
Alignment:
| Q |
12 |
caaaggtgaaaacttacaagcctaaacataa---taataggacaacaagactaatgagaaagaaaagaaataacaaccttgtgagtatgattaaaattga |
108 |
Q |
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| T |
33071337 |
caaaggtgaaaacttacaagcctaaacataataataataggacaacaagactaatgagaaagaaaagaaataacaaccttgtgaatatgattaaaattga |
33071436 |
T |
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| Q |
109 |
aatggtttgttttagtttgattgatatacaaatggaaggaatgaggttgttatttatagaaaaatacaagagtgttttgttgtggtcatcaatgcaaatt |
208 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33071437 |
aatggtttgtttttgtttgattgatatacaaatggatagaatgaggttgttatttatagaaaaatacaagagtgttttgttgtggtcatcaatgcaaatt |
33071536 |
T |
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| Q |
209 |
tttatagaaaaatattatttggacatccatatagatacgatacattttttaaaataaagaattgaatatgattgtcatgtacattagatgtaagtagttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33071537 |
tttatagaaaaatattatttggacatccatatagatacgatacattttttaaaagaaagaattgaatatgattgtcatgtacattagatgtaagtagttt |
33071636 |
T |
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| Q |
309 |
atcacttagtgtccgcttgacttttagtcatgagtaattttcatgtatattgtgttataatttgttctgaaagtg |
383 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
33071637 |
atcacttagtgtccgcttgactttcagtcatgtataattttcatgtatattacgttataatttgttccgaaagtg |
33071711 |
T |
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