View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_54 (Length: 397)
Name: NF16533_low_54
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 11610690 - 11610324
Alignment:
| Q |
16 |
gacagaatgtgaaccaagggggaactcatatggtcacataaattcaaattggactagtctctacaatgatatttgcctaatggtcccctcttggaaaaaa |
115 |
Q |
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| T |
11610690 |
gacagaatgtgaaccaagggggaactcatatggtcacataaattcaaattggactagtctctacaatgatatttgcctaatggtcccctcttggaaaaaa |
11610591 |
T |
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| Q |
116 |
tcatcaaaagtcatctttgaacaaactgtactagcatcaaattttcaaaaaccagataacaaatttccattagccatggaggctacgcaaaatgaggtat |
215 |
Q |
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| T |
11610590 |
tcatcaaaagtcatctttgaacaaactgtactagcatcaaattttcaaaaaccagataacaaatttccattagccatggaggctacgcaaaatgaggtgt |
11610491 |
T |
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| Q |
216 |
tatgagagttccacattgaataagatatgacctgaaaatatgtttaaaagtgaaagacatctctcatcttataagctcgttaactttgtaaggatgagtt |
315 |
Q |
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| T |
11610490 |
tatgagagttccacattgaataagatatgacctgaaaatatgtttaaaagtgaaagacatctctcatcttataagctcgttaactttgtaaggatgagtt |
11610391 |
T |
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| Q |
316 |
gggtccaatataaaaaccttatattatagtagagtttatcgaagatttgttgggccacagtctatta |
382 |
Q |
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| T |
11610390 |
gggcccaatataaaaacctaatattatagtagagtttatcgaagatttgttgggccacagtctatta |
11610324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 3951922 - 3951968
Alignment:
| Q |
220 |
agagttccacattgaataagatatgacctgaaaatatgtttaaaagt |
266 |
Q |
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| T |
3951922 |
agagtcccacattgaatgagatatgacctgaaaatgtgtttataagt |
3951968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 4096413 - 4096466
Alignment:
| Q |
228 |
acattgaataagatatgacctgaaaatatgtttaaaagtgaaagacatctctca |
281 |
Q |
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| T |
4096413 |
acattgaatgagatatgacctgaaaatgtatttataagtgagagaaatctctca |
4096466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 52148191 - 52148143
Alignment:
| Q |
220 |
agagttccacattgaataagatatgacctgaaaatatgtttaaaagtga |
268 |
Q |
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| T |
52148191 |
agagttccacattgaacgagatatgacctgaaaatgtgtatataagtga |
52148143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 14256953 - 14256901
Alignment:
| Q |
227 |
cacattgaataagatatgacctgaaaatatgtttaaaagtgaaagacatctct |
279 |
Q |
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| T |
14256953 |
cacattgattgagatatgacctgaaaatgtgtttataagtgagagaaatctct |
14256901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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