View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_56 (Length: 391)
Name: NF16533_low_56
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 51114683 - 51114325
Alignment:
| Q |
15 |
agagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtaccttatttgccgtgtgaaatgaactaca---------- |
104 |
Q |
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| T |
51114683 |
agagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtatcttatttgccgtgtgaaatgaactacagacatacaca |
51114584 |
T |
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| Q |
105 |
tttcaagcatgcattctatctaacttctaatccaacacataaataaggttcaaacaccaatggacatgaataattagcagaatattttctcagatatctn |
204 |
Q |
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| T |
51114583 |
tttcaagcatgcattctatctaacttctaatccaacaaataaataaggttcaaacaccaatggacatgaataatttgcagaatattttctcagatatcta |
51114484 |
T |
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| Q |
205 |
nnnnnngaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatagccaaaatttacagcttgcaagttgaatcaaaataaaa |
304 |
Q |
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| T |
51114483 |
aaaaaagaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatagccaaaatttacagcttgcaagttgaatcaaaataaaa |
51114384 |
T |
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| Q |
305 |
accgagcttgaatgcttaactaaattgttacctttccaattccaaccaaagaagaccat |
363 |
Q |
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| T |
51114383 |
accgagcttgaatgcttaactaaattgttacctttccaattccaaccaaagaagaccat |
51114325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 546367 - 546450
Alignment:
| Q |
279 |
agcttgcaagttgaatcaaaataaaaaccgagcttgaatgcttaactaaattgttacctttccaattccaaccaaagaagacca |
362 |
Q |
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| T |
546367 |
agcttgcaagttgaatcaaaataaagatcaagcttgactgctaaactaaattgtttcctttccaattctttctaaagaagacca |
546450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 552568 - 552621
Alignment:
| Q |
211 |
gaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatag |
267 |
Q |
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| T |
552568 |
gaaagagacaatcaagaattaaatttgca---gaataatattaacaccaaaccatag |
552621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 1554033 - 1553995
Alignment:
| Q |
322 |
aactaaattgttacctttccaattccaaccaaagaagac |
360 |
Q |
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| T |
1554033 |
aactaaattgtaatctttccaattccaaccaaagaagac |
1553995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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