View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_58 (Length: 388)
Name: NF16533_low_58
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 50087214 - 50086860
Alignment:
| Q |
18 |
ggtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgt |
117 |
Q |
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| T |
50087214 |
ggtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgt |
50087115 |
T |
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| Q |
118 |
ttggaaatgtaacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctag |
217 |
Q |
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| T |
50087114 |
ttggaaatgtaacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctag |
50087015 |
T |
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| Q |
218 |
tctactactctattgggagaaaagaaattcattcaaggtggt-nnnnnnntatttggtcaattactttgaatatttcagtcaaatactattttattgata |
316 |
Q |
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| T |
50087014 |
tc---tactctattgggagaaaagaaattcattcaaggtggtaaaaaaaatatttggtcaattactttgaatatttcagtcaaatactattttattgata |
50086918 |
T |
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| Q |
317 |
ctgtaaaatagttcatgagtggtcatagttataccatttggccccttcactctctctg |
374 |
Q |
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| T |
50086917 |
ctgtaaaatagttcatgagtggtcatagttataccatttggccccttcactctctctg |
50086860 |
T |
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Back To:
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Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 23271475 - 23271277
Alignment:
| Q |
18 |
ggtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgt |
117 |
Q |
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| T |
23271475 |
ggtatgaattgaactatattgaatcaaaaggaaggatgaagagaggtgatagagtatggcaaatagcttttggaagtggatttaaatgcaatagtgctgt |
23271376 |
T |
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| Q |
118 |
ttggaaatgtaacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactcta |
216 |
Q |
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| T |
23271375 |
gtggaaatgtaatagaagcattaaaacacctgttaatggaccttgggaagattgcattgatcgctatccagttcatattcctgagattgttaagctcta |
23271277 |
T |
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