View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_6 (Length: 670)

Name: NF16533_low_6
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_6
NF16533_low_6
[»] chr5 (5 HSPs)
chr5 (364-658)||(5994689-5994983)
chr5 (7-295)||(5995052-5995340)
chr5 (374-646)||(17572312-17572584)
chr5 (374-635)||(17620134-17620395)
chr5 (243-295)||(17620000-17620052)
[»] chr7 (5 HSPs)
chr7 (374-646)||(14709909-14710181)
chr7 (187-295)||(26260335-26260443)
chr7 (260-295)||(26227508-26227543)
chr7 (245-294)||(26191786-26191835)
chr7 (243-295)||(14710257-14710309)
[»] chr6 (1 HSPs)
chr6 (374-561)||(12613646-12613833)
[»] chr8 (4 HSPs)
chr8 (368-633)||(16908467-16908732)
chr8 (242-295)||(16908808-16908861)
chr8 (423-456)||(10201902-10201935)
chr8 (423-456)||(10208975-10209008)
[»] chr1 (2 HSPs)
chr1 (368-607)||(14869927-14870166)
chr1 (181-295)||(14869743-14869857)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 364 - 658
Target Start/End: Complemental strand, 5994983 - 5994689
Alignment:
Q  364 tggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgtt 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5994983 tggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgtt 5994884  T
Q  464 gttgaaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtg 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5994883 gttgaaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtg 5994784  T
Q  564 ttcctgtgggagctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctattaggttgatgatg 658  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5994783 ttcctgtgggagctaaagaatggaggaattggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctattaggttgatgatg 5994689  T

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Target: chr5; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 5995340 - 5995052
Alignment:
Q  7 tgaaagtgaatattatgatcattacaagaaagttatgggaactaaaagttggggacttggacctgtttctttatgggctaatcaagatgattcagataaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5995340 tgaaagtgaatattatgatcattacaagaaagttatgggaactaaaagttggggacttggacctgtttctttatgggctaatcaagatgattcagataaa 5995241  T
Q  107 gctgcaagagggtatgcaaagaaagaagaaggtgcaaaagaagaagggtggttgaaatggttgaattcaaaaccagatggttctgttttatatgtaagtt 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5995240 gctgcaagagggtatgcaaggaaagaagaaggtgcaaaagaagaagggtggttgaaatggttgaattcaaaaccagatggttctgttttatatgtaagtt 5995141  T
Q  207 ttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgtt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5995140 ttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaaaattcaggtcataatttcatttgggttgtt 5995052  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 374 - 646
Target Start/End: Complemental strand, 17572584 - 17572312
Alignment:
Q  374 tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg 473  Q
    |||||||| ||||| ||||| || ||  | || |||||||||||  | || ||||||||  | |||||||||||||||||||| ||  | ||||||||      
T  17572584 tatttgatatggggttgggctccccaattgttaatacttgagaacaaagctattggaggaatggtgagtcattgtggttggaatacaatagttgaaagca 17572485  T
Q  474 tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtggg 573  Q
    |||||||||| || || |  ||||| |||||||| ||||||||||||||||| ||||||||  | || ||||||||||||| |||||| ||  |||| ||    
T  17572484 tgaatgttggtttgcctatggtgacttggcctttgtttgctgaacatttttttaatgagaagttggttgttgatgtgttgagaattggggtatctgttgg 17572385  T
Q  574 agctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctatt 646  Q
     || ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  17572384 ggccaaagaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctatt 17572312  T

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Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 374 - 635
Target Start/End: Original strand, 17620134 - 17620395
Alignment:
Q  374 tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg 473  Q
    |||||||| ||||| ||||| |||||  | ||||||||||| ||| | || ||||||||  | |||| |||||||||||||| |||  |  | |||||      
T  17620134 tatttgatatggggttgggccccacaaatgttgatacttgaaaataaagctattggaggaattgtgactcattgtggttggagcacaataatggaaagca 17620233  T
Q  474 tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtggg 573  Q
    | || ||||||||||| |  ||||  |||||||| |||||||| || ||||| ||||||||  || |  |||||||||||| |||||| ||| |||| ||    
T  17620234 ttaaagttgggttacctatggtgagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtttctgttgg 17620333  T
Q  574 agctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattg 635  Q
     |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  17620334 ggctaaagaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattg 17620395  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 17620000 - 17620052
Alignment:
Q  243 ttgaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgtt 295  Q
    ||||||| || ||||||||||||| |||| | |||||||||||||||||||||    
T  17620000 ttgaaatagctcatgcacttgaagcttcaagccataatttcatttgggttgtt 17620052  T

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Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 374 - 646
Target Start/End: Complemental strand, 14710181 - 14709909
Alignment:
Q  374 tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg 473  Q
    |||||||| ||||| |||||||||||  | ||||||||||| ||| | || ||||||||  | |||| |||||||||||||| |||  |  | |||||      
T  14710181 tatttgatatggggttgggcaccacaaatgttgatacttgaaaataaagctattggaggaattgtgactcattgtggttggagcacaataatggaaagca 14710082  T
Q  474 tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtggg 573  Q
    | || ||||||||| | |  ||||  |||||||| |||||||| || ||||| ||||||||  || |  |||||||||||| |||||| ||  |||| ||    
T  14710081 ttaaagttgggttatctatggtgagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttgg 14709982  T
Q  574 agctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctatt 646  Q
     |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  14709981 ggctaaagaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctatt 14709909  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 26260335 - 26260443
Alignment:
Q  187 ttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaagattcaggtcataatttcatt 286  Q
    |||||| || |||||||||||||| ||  ||| ||   || ||||| ||||| | |||||||| || |||| ||||||| ||||||||||||||||||||    
T  26260335 ttctgtgttgtatgtaagttttggaagcttgactaggctttcttatgctcaggttgttgaaatagctcatggacttgaaaattcaggtcataatttcatt 26260434  T
Q  287 tgggttgtt 295  Q
    |||||||||    
T  26260435 tgggttgtt 26260443  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 295
Target Start/End: Original strand, 26227508 - 26227543
Alignment:
Q  260 cttgaagattcaggtcataatttcatttgggttgtt 295  Q
    |||||| |||||||||||||||||||||||||||||    
T  26227508 cttgaaaattcaggtcataatttcatttgggttgtt 26227543  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 26191786 - 26191835
Alignment:
Q  245 gaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgt 294  Q
    |||||||||||||  |||||| |||||||||||||||| || ||||||||    
T  26191786 gaaattgcacatgggcttgaaaattcaggtcataattttatctgggttgt 26191835  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 14710309 - 14710257
Alignment:
Q  243 ttgaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgtt 295  Q
    ||||||| || ||||||||||||| |||| | ||| |||||||||||||||||    
T  14710309 ttgaaatagctcatgcacttgaagcttcaagccatgatttcatttgggttgtt 14710257  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 374 - 561
Target Start/End: Original strand, 12613646 - 12613833
Alignment:
Q  374 tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg 473  Q
    |||||||| ||||| |||||||||||  | ||||||||||||||  | || ||||||||  | |||| |||||||||||||||||| || |||||||||     
T  12613646 tatttgatatggggttgggcaccacaattgttgatacttgagaacaaagctattggaggaattgtgactcattgtggttggaacacagtagttgaaagtt 12613745  T
Q  474 tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattgg 561  Q
    ||||||||||||| || |  ||||| |||||||||||||||||||| |||||  |||||||| | || ||||| ||||| ||||||||    
T  12613746 tgaatgttgggttgcctatggtgacttggcctttatttgctgaacaattttttcatgagaaattggtggttgaagtgttaaaaattgg 12613833  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 633
Target Start/End: Complemental strand, 16908732 - 16908467
Alignment:
Q  368 aaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttg 467  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||| ||| ||  |||| ||||||   | |||| ||||||||| ||||||||| || | |    
T  16908732 aaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgttgtgactcattgtgggtggaacactattatgg 16908633  T
Q  468 aaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcc 567  Q
    ||||||| ||||  || ||||||   |  || ||||| || ||||||||||| ||||||||||||| | |  | |||||||||||||| ||||||||  |    
T  16908632 aaagtgtaaatgcaggtttaccattggctacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggc 16908533  T
Q  568 tgtgggagctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatat 633  Q
     || ||||| ||||||||||| || |||||||||||||||  ||| || ||||| ||||| |||||    
T  16908532 agttggagcaaaagaatggagaaattggaatgagtttggggatgatgtggtgaagagggaggatat 16908467  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 16908861 - 16908808
Alignment:
Q  242 gttgaaattgcacatgcacttgaagattcaggtcataatttcatttgggttgtt 295  Q
    |||||||| || ||||||||||||||||| || ||| |||||||||||||||||    
T  16908861 gttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgtt 16908808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 10201935 - 10201902
Alignment:
Q  423 caattggagggttagtgagtcattgtggttggaa 456  Q
    ||||||||||||| ||||||||||||||||||||    
T  10201935 caattggagggtttgtgagtcattgtggttggaa 10201902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 10209008 - 10208975
Alignment:
Q  423 caattggagggttagtgagtcattgtggttggaa 456  Q
    ||||||||||||| ||||||||||||||||||||    
T  10209008 caattggagggtttgtgagtcattgtggttggaa 10208975  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 368 - 607
Target Start/End: Original strand, 14869927 - 14870166
Alignment:
Q  368 aaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttg 467  Q
    |||||||||||||| ||||| ||||||||||| ||  ||||||| ||| ||  |||| ||||||   | |||| ||| ||||| ||||||||| || | |    
T  14869927 aaaggctatttgatatggggttgggcaccacaactgctgatactagagcatgctgcagttggagcagtggtgactcactgtggctggaacactattatgg 14870026  T
Q  468 aaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcc 567  Q
    ||||||| ||||  || ||  ||   |  || ||||| || ||||||||||| ||||||||||||| | |  | |||||||||||||| ||||||||  |    
T  14870027 aaagtgtaaatgcaggtttgtcattggcaacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggc 14870126  T
Q  568 tgtgggagctaaagaatggaggaactggaatgagtttggg 607  Q
     || ||||| || |||||||| ||||||||||||||||||    
T  14870127 agttggagcaaaggaatggagaaactggaatgagtttggg 14870166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 14869743 - 14869857
Alignment:
Q  181 agatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaagattcaggtcataat 280  Q
    ||||| ||||||| | ||||| |||||||| || ||||| || || |||  | ||||| | |||||||| || |||||||||||| |||| || ||| ||    
T  14869743 agatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgat 14869842  T
Q  281 ttcatttgggttgtt 295  Q
    |||||||||||||||    
T  14869843 ttcatttgggttgtt 14869857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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