View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_61 (Length: 374)
Name: NF16533_low_61
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 39491600 - 39491254
Alignment:
| Q |
17 |
aatctcaccagcatttggaccttccaaaacctccttaatacacctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacacca |
116 |
Q |
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|||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491600 |
aatctcaccagcatgtggcccttccaaaacctccctaatacacctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacacca |
39491501 |
T |
|
| Q |
117 |
ttcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttg |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491500 |
ttcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttg |
39491401 |
T |
|
| Q |
217 |
agttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491400 |
agttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctc |
39491301 |
T |
|
| Q |
317 |
tttcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491300 |
tttcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
39491254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 39287435 - 39287781
Alignment:
| Q |
17 |
aatctcaccagcatttggaccttccaaaacctccttaatacacctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacacca |
116 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||| |
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| T |
39287435 |
aatctcaccagcattaggcccttccataacctccctaatacacctctcaatctcttttacacttgcaaccccatcttccccataattcactttcacccca |
39287534 |
T |
|
| Q |
117 |
ttcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttg |
216 |
Q |
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|
|||||||||||||||| ||||||||| |||||||||||||| ||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
39287535 |
ttcctaaacacattctcaataagcattgcatttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttg |
39287634 |
T |
|
| Q |
217 |
agttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39287635 |
agttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctc |
39287734 |
T |
|
| Q |
317 |
tttcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39287735 |
tttcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
39287781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 340
Target Start/End: Original strand, 5905995 - 5906115
Alignment:
| Q |
220 |
tccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctcttt |
319 |
Q |
| |
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|||||||||||||| | ||||||||| || |||||||| |||| |||||||| || ||||||| | |||||||||||||| |||| || |||| |
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| T |
5905995 |
tccaaccacaatgagacaaaaaacaagccactgcagggtggcttaaaaccttctcttgattacaccatgttacaaccaaacctcttccttttgtttcttc |
5906094 |
T |
|
| Q |
320 |
caaaaactcttttggtaattc |
340 |
Q |
| |
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||||||| ||||||| ||||| |
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|
| T |
5906095 |
caaaaacccttttggaaattc |
5906115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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