View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_64 (Length: 361)
Name: NF16533_low_64
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 32696440 - 32696776
Alignment:
| Q |
15 |
gtcatgggatgttgggaaaattatgatcgtttctggctgccgacgagcaactccggctccgactgcattttctagcgagttgagttcagtgcattcaaac |
114 |
Q |
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| T |
32696440 |
gtcatggggtgttgggaaaattatgatcgtttctggctgccgacgagcaaccccggctccgactgcgttttctagcgagttgagttcagtgcattcaaac |
32696539 |
T |
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| Q |
115 |
atgtttctgctgtaagggtaaaacgactgcgatttttctccgttttgaaaaaatggagctactgagtattgttgttatggggccagatctgaatataaaa |
214 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32696540 |
atgtttctgctgtaagggtaaaatgactgcgatttttctcctttttgaaaaaatggagttactgagtattgttgttatggggccagatctgaatataaaa |
32696639 |
T |
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| Q |
215 |
aggagaagatttgggtgttcaatagtttaatggattgatgatgttgcaagttgttactattgttgatgatggtgttgttaaagaaattgatagtgttgtt |
314 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32696640 |
aggagaagatttgggtgttcaattgtttaatggattgatgatgttgcaagttgttactattgttgatgatggtgttgttaaagaaattgatagtgttgtt |
32696739 |
T |
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| Q |
315 |
gacagtggatttatgttggatcaagttttctcctttg |
351 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |
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| T |
32696740 |
gacaatggatttatgttgaatcaagttttctcctttg |
32696776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 25419899 - 25420234
Alignment:
| Q |
15 |
gtcatgggatgttgggaaaattatgatcgtttctggctgccgacgagcaactccggctccgactgcattttctagcgagttgagttcagtgcattcaaac |
114 |
Q |
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| T |
25419899 |
gtcatgggatgttggaaaaattatgatcgtttctggctgccgacgagcaactccggctcc-actgcgttttccagcgagttgagttcagtgaattcaaac |
25419997 |
T |
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| Q |
115 |
atgtttctgctgtaagggtaaaacgactgcgatttttctccgttttgaaaaaatggagctactgagtattgttgttatggggccagatctgaatataaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25419998 |
atgtttctgctgtaagggtaaaacgactgcgatttttctcctttttgaaaaaattgagctactgagtattgttgttatggggccagatttgaatataaaa |
25420097 |
T |
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| Q |
215 |
aggagaagatttgggtgttcaatagtttaatggattgatgatgttgcaagttgttactattgttgatgatggtgttgttaaagaaattgatagtgttgtt |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25420098 |
aggagaagatttggttgttcaatagtttaatggattgatgttgttgcaagttgttactattgttgatgatggtgttgttaaagaaattgatagtgttgtt |
25420197 |
T |
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| Q |
315 |
gacagtggatttatgttggatcaagttttctcctttg |
351 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
25420198 |
gacaatggatttatgttggatcaagttttctcctttg |
25420234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 31763127 - 31763092
Alignment:
| Q |
95 |
tgagttcagtgcattcaaacatgtttctgctgtaag |
130 |
Q |
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| T |
31763127 |
tgagttcagtgcattcaaacttgtttctgctgtaag |
31763092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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