View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_65 (Length: 361)
Name: NF16533_low_65
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 14545367 - 14545037
Alignment:
| Q |
8 |
gagagagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccaccaccagtgcagagatgactgagttgagtttcgatcttgttcaga |
107 |
Q |
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| T |
14545367 |
gagagagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccacca---gtgcagagatgactgagttgagtttcgatcttgttcaga |
14545271 |
T |
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| Q |
108 |
aacgttttagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaa |
207 |
Q |
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| T |
14545270 |
aacgttgtagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaa |
14545171 |
T |
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| Q |
208 |
gttgcatttaatttatttattttcaataaaat-nnnnnnntaaatatatttttgtgttcgtgcgagcgaaacaaagaaagaaagaaaggatttaa-gggg |
305 |
Q |
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| T |
14545170 |
gttgcatttaatttatttattttcaataaaataaaaaaaatataaatatttttgtgttcgtgcaagcgaaac----aaagaaagaaaggatttaaggggg |
14545075 |
T |
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| Q |
306 |
ggaccataaattcatcaagctcgggatcggctccaaaa |
343 |
Q |
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| T |
14545074 |
ggaccataaattcatcaagctcgggatcggctccaaaa |
14545037 |
T |
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