View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_68 (Length: 349)
Name: NF16533_low_68
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 39726655 - 39726975
Alignment:
| Q |
19 |
ggttcaatctcagcagtctccaaactaccgtcatgatgataatgcaccgtcgcgggtagccccgcctgtctgattagaaatttttggcctaaagcagggc |
118 |
Q |
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| T |
39726655 |
ggttcaatctcagcagtctccaaactaccgtcatgatgataatgcaccgtcgcgggtagccctgcctgtctgattagaaatttctggcctaaagcagggc |
39726754 |
T |
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| Q |
119 |
cagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatgtaacccaacagattataaccgccgcgaaagcgtagagagccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726755 |
cagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatgtaacccaacagattataaccgccgcgaaagcgtagagagccat |
39726854 |
T |
|
| Q |
219 |
gaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgatatcatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726855 |
gaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgatatcatt |
39726954 |
T |
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| Q |
319 |
tgccatgagttgtctcctttg |
339 |
Q |
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||||||||||||||||||||| |
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| T |
39726955 |
tgccatgagttgtctcctttg |
39726975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 94 - 339
Target Start/End: Original strand, 25671269 - 25671514
Alignment:
| Q |
94 |
agaaatttttggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcc-catgtaacccaacagattata |
192 |
Q |
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| T |
25671269 |
agaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttcatcaccaaaagccattctataagcaacaag-aacccaacagattaat |
25671367 |
T |
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| Q |
193 |
accgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaa |
292 |
Q |
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|| || || ||||| || || ||||||||||| || || || ||||||||||||||||||||||| ||||||| || |||||||||||||||||||| | |
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| T |
25671368 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
25671467 |
T |
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| Q |
293 |
ttccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
339 |
Q |
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||||| || || |||| | |||||||||||| ||||||||||||| |
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| T |
25671468 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttg |
25671514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 5625597 - 5625722
Alignment:
| Q |
214 |
gccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgata |
313 |
Q |
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||||||||||| || || | ||||||||||||||| || || || ||||||| || || || |||||||||||||| | ||||| ||||| | || | |
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| T |
5625597 |
gccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtagaccaactagggttgatgctg |
5625696 |
T |
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| Q |
314 |
tcatttgccatgagttgtctcctttg |
339 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5625697 |
tcatttgccatgagttgtctcctttg |
5625722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 13350166 - 13350230
Alignment:
| Q |
123 |
tttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatgtaacccaacaga |
187 |
Q |
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|||||||||||| || |||||| | |||||||||||||| |||||||||| ||||||||||| |
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| T |
13350166 |
tttaccccaaaatggaaaaagtgtatcaccaaatgacattctataagcccaaaaaacccaacaga |
13350230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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