View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_7 (Length: 666)
Name: NF16533_low_7
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 597; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 18 - 655
Target Start/End: Complemental strand, 27045996 - 27045359
Alignment:
| Q |
18 |
aaaagaacctattgcattttcacctttagttcaaccagaaacagttattaaaatctattgttttaaggttgagaatgaggtgatnnnnnnncttaagatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27045996 |
aaaagaacctattgcattttcacctttagttcaaccaaaaacagttattaaaatctattgttttaaggttgagaatgaggtgataaaaagacttaagatg |
27045897 |
T |
|
| Q |
118 |
agtttgatgaaggaaggtgatagtgaaagtgaaccagttacaacttatgagtcacttggtgcttatgtgtggaggtcaagagcaagagccttacaactta |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045896 |
agtttgatgaaggaaggtggtagtgaaagtgaaccagttacaacttatgagtcacttggtgcttatgtgtggaggtcaagagcaagagccttacaactta |
27045797 |
T |
|
| Q |
218 |
gcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttatgatcctttgcctatagggtattatggtaatactactgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045796 |
gcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttatgatcctttgcctatagggtattatggtaatactactgt |
27045697 |
T |
|
| Q |
318 |
ggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045696 |
ggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccact |
27045597 |
T |
|
| Q |
418 |
gattatgtcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtgga |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045596 |
gattatgtcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtgga |
27045497 |
T |
|
| Q |
518 |
agcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagg |
617 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27045496 |
agcatttaggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagg |
27045397 |
T |
|
| Q |
618 |
gtgcattttcgcatctcctggtaaacttgatgatgatg |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045396 |
gtgcattttcgcatctcctggtaaacttgatgatgatg |
27045359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 180 - 425
Target Start/End: Complemental strand, 27069843 - 27069598
Alignment:
| Q |
180 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||| ||||||||||||||||||| ||||| | | ||| | || | |
|
|
| T |
27069843 |
ttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgttagttggtatgagacgtaacttgatggatttt |
27069744 |
T |
|
| Q |
280 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
379 |
Q |
| |
|
||| |||| || | ||||||||| || ||| |||| |||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27069743 |
gatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctcgatgaaatgccactctatgaaattgtta |
27069644 |
T |
|
| Q |
380 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgt |
425 |
Q |
| |
|
|| |||| |||||| ||||||| ||| ||| | ||||||||||||| |
|
|
| T |
27069643 |
agctgattaaagagactaaaaatatttctttcaccactgattatgt |
27069598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 180 - 434
Target Start/End: Complemental strand, 27062776 - 27062522
Alignment:
| Q |
180 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| | ||| ||||||||||||| ||||| | | ||| | |||| |
|
|
| T |
27062776 |
ttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgttagttggtatcagacgaaacttgatggattat |
27062677 |
T |
|
| Q |
280 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
379 |
Q |
| |
|
|| |||| |||| |||||||||||| ||| |||| | |||| ||||||||| |||||||| ||||| ||| ||||||||||||||||| |||| |||| |
|
|
| T |
27062676 |
gaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtgaactcgatgaaatgccactctataaaatcgtta |
27062577 |
T |
|
| Q |
380 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
434 |
Q |
| |
|
|| |||| |||||| ||||||| ||||||| | | |||||||||| | |||||| |
|
|
| T |
27062576 |
agctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactc |
27062522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 180 - 434
Target Start/End: Complemental strand, 27056734 - 27056480
Alignment:
| Q |
180 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
279 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| || |||||| ||||| || ||| || ||||||||||||||||| | || | | |||| |
|
|
| T |
27056734 |
ttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattgcagttggtattagacgcaacttggaggattat |
27056635 |
T |
|
| Q |
280 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
379 |
Q |
| |
|
||| |||| |||| |||||| ||||| ||| ||||| | |||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27056634 |
gatactttacctaaagggtaatatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaattgtta |
27056535 |
T |
|
| Q |
380 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
434 |
Q |
| |
|
|| |||| |||||| ||||||| ||||||| | |||||||||||| |||||| |
|
|
| T |
27056534 |
agctgattaaagagactaaaaatattgctttcattgctgattatgtcacaaactc |
27056480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 180 - 608
Target Start/End: Complemental strand, 27098565 - 27098143
Alignment:
| Q |
180 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
279 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||| || |||||| ||||| | ||| || ||| ||||||||||||| | |||| | || | |
|
|
| T |
27098565 |
ttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggtgaaacagtactgaccattgtagcaggtattagacgcaacttgaaggatttt |
27098466 |
T |
|
| Q |
280 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
379 |
Q |
| |
|
|||||||| |||| || |||||||| ||| | ||| |||| ||| |||||||||||||||||||||| |||||| |||||||||||||||| ||| |
|
|
| T |
27098465 |
gatcctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgagctcgatgaaaggccactctatgaaattatta |
27098366 |
T |
|
| Q |
380 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcat |
479 |
Q |
| |
|
|| | |||| |||| ||||||| ||||||||| ||||||||| ||||||||| || ||| |||| | |||| | |||| | || | || || |
|
|
| T |
27098365 |
agctcatcagagagactaaaaacattgcttccaccactgattttgtcaaaaattcaatc---aacacgttggagactaattataacgaggaatcaaggat |
27098269 |
T |
|
| Q |
480 |
ggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaatttt |
579 |
Q |
| |
|
|| ||| ||||| |||||| ||||||| |||||||| |||||||||||| |||||| ||| | |||||||||| ||| | ||| |||||||||| |
|
|
| T |
27098268 |
ggtaagtactggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaa---tgtagattttggtgggaacgaagcagtgaattta |
27098172 |
T |
|
| Q |
580 |
gtaccagcaccatgcaacatgtttgcgtc |
608 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27098171 |
gtaccagcaccatgcaacatgtttgcgtc |
27098143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 180 - 608
Target Start/End: Complemental strand, 27105564 - 27105142
Alignment:
| Q |
180 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
279 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| |||||| || ||| |||||||||||||| |||| | || | |
|
|
| T |
27105564 |
ttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtagctggtattagacgcaagttgaaggatttt |
27105465 |
T |
|
| Q |
280 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
379 |
Q |
| |
|
|| ||||| |||| || |||||||| ||| | ||| |||| ||| ||||||||||||||| |||||| |||||| |||||||||||||||| ||| |
|
|
| T |
27105464 |
gaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattatta |
27105365 |
T |
|
| Q |
380 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcat |
479 |
Q |
| |
|
| | || | |||| ||||||| ||||||||| ||||||||| | ||||||| || ||| | ||| | ||||| | |||| | || | || || |
|
|
| T |
27105364 |
acctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaa---cacgttggagacgaattataaagaggaatccaggat |
27105268 |
T |
|
| Q |
480 |
ggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaatttt |
579 |
Q |
| |
|
| ||| |||||| |||||| ||||||| |||||||| |||||||||||| |||||| |||| |||||||||| ||| ||||| |||||||||| |
|
|
| T |
27105267 |
gctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggcatgaagcagtgaattta |
27105171 |
T |
|
| Q |
580 |
gtaccagcaccatgcaacatgtttgcgtc |
608 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
27105170 |
gtaccagcaccatgcaacttgtttgcgtc |
27105142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 180 - 434
Target Start/End: Complemental strand, 27085899 - 27085645
Alignment:
| Q |
180 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||| |||| | | | || |||||||| |||||||| | | || | |||| |
|
|
| T |
27085899 |
ttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccattgcagttggtagtagacgcaacttaaaggattat |
27085800 |
T |
|
| Q |
280 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
379 |
Q |
| |
|
||| |||| |||| |||||||||||| ||| ||| | | |||| ||| ||||| |||||||| |||| |||||| ||||||||||||||||||| ||| |
|
|
| T |
27085799 |
gatactttacctaaagggtattatgggaattctattatagatgtaaatgttgttttaaaagtgagtgtgctcaacgaaatgccactctatgaaaccatta |
27085700 |
T |
|
| Q |
380 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
434 |
Q |
| |
|
|| |||| |||||| ||||||| ||||||| | | |||||||||| | |||||| |
|
|
| T |
27085699 |
agctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactc |
27085645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 434
Target Start/End: Complemental strand, 27041348 - 27041208
Alignment:
| Q |
294 |
agggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagag |
393 |
Q |
| |
|
|||||||||||| ||| ||||| | |||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
27041348 |
agggtattatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaaccattaagctgattaaagag |
27041249 |
T |
|
| Q |
394 |
gctaaaaagattgcttcctccactgattatgtcaaaaactc |
434 |
Q |
| |
|
||||||| ||||||| | | |||||||||| | |||||| |
|
|
| T |
27041248 |
actaaaaatattgctttcactgctgattatgttacaaactc |
27041208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 27041421 - 27041360
Alignment:
| Q |
180 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttga |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || |||||| ||||| |||||| |
|
|
| T |
27041421 |
ttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttga |
27041360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 605
Target Start/End: Complemental strand, 27062411 - 27062354
Alignment:
| Q |
548 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgc |
605 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||| |
|
|
| T |
27062411 |
tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgc |
27062354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 603
Target Start/End: Complemental strand, 19414212 - 19414159
Alignment:
| Q |
550 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
603 |
Q |
| |
|
||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
19414212 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
19414159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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