View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_70 (Length: 344)

Name: NF16533_low_70
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_70
NF16533_low_70
[»] chr8 (6 HSPs)
chr8 (17-166)||(15339188-15339319)
chr8 (17-166)||(15428253-15428384)
chr8 (17-166)||(15519557-15519688)
chr8 (245-303)||(15339398-15339456)
chr8 (245-303)||(15428463-15428521)
chr8 (245-303)||(15519767-15519825)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 15339188 - 15339319
Alignment:
Q  17 tgggagcaaaaagatgatgaattagaatttcgttgtaagcgaaactggctttgtagttagcagtgtttttaaactaatgagaaagttcaatgaaatgaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||    
T  15339188 tgggagcaaaaagatgatgaattagaatttcgttgtaagcgaaactggctttgtagttagcagtgtttttaaact------------------aatgaga 15339269  T
Q  117 ttgtctttaaaataataaaagatacttaattgcgaagtaaatgtattgtg 166  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15339270 ttgtctttaaaatactaaaagatacttaattgcgaagtaaatgtattgtg 15339319  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 15428253 - 15428384
Alignment:
Q  17 tgggagcaaaaagatgatgaattagaatttcgttgtaagcgaaactggctttgtagttagcagtgtttttaaactaatgagaaagttcaatgaaatgaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||    
T  15428253 tgggagcaaaaagatgatgaattagaatttcgttgtaagcgaaactggctttgtagttagcagtgtttttaaact------------------aatgaga 15428334  T
Q  117 ttgtctttaaaataataaaagatacttaattgcgaagtaaatgtattgtg 166  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15428335 ttgtctttaaaatactaaaagatacttaattgcgaagtaaatgtattgtg 15428384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 15519557 - 15519688
Alignment:
Q  17 tgggagcaaaaagatgatgaattagaatttcgttgtaagcgaaactggctttgtagttagcagtgtttttaaactaatgagaaagttcaatgaaatgaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||    
T  15519557 tgggagcaaaaagatgatgaattagaatttcgttgtaagcgaaactggctttgtagttagcagtgtttttaaact------------------aatgaga 15519638  T
Q  117 ttgtctttaaaataataaaagatacttaattgcgaagtaaatgtattgtg 166  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15519639 ttgtctttaaaatactaaaagatacttaattgcgaagtaaatgtattgtg 15519688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 15339398 - 15339456
Alignment:
Q  245 aataagaataaacattgtaaccaaaaaagacgaagtaacattaataagttggtcctttt 303  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15339398 aataagaattaacattgtaaccaaaaaagaagaagtaacattaataagttggtcctttt 15339456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 15428463 - 15428521
Alignment:
Q  245 aataagaataaacattgtaaccaaaaaagacgaagtaacattaataagttggtcctttt 303  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15428463 aataagaattaacattgtaaccaaaaaagaagaagtaacattaataagttggtcctttt 15428521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 15519767 - 15519825
Alignment:
Q  245 aataagaataaacattgtaaccaaaaaagacgaagtaacattaataagttggtcctttt 303  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15519767 aataagaattaacattgtaaccaaaaaagaagaagtaacattaataagttggtcctttt 15519825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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