View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_72 (Length: 339)
Name: NF16533_low_72
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 51114317 - 51114013
Alignment:
| Q |
19 |
acacacacaaataaaaacatctagtctagcgtataatataataaaagggataaataagttatatccgtaactaaatacatatatgtaagttgacatttat |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51114317 |
acacacacaaataaaaacatctagtctagcatataatataataaaagggataaataagttaaatccgtaactaaatacatatatgtaagttgacatttat |
51114218 |
T |
|
| Q |
119 |
aaaataaattaatttctcatataagtaaatccgtaaacaacaaacaacttgcatttcagagtttatacttcagaagagttgtttcatgtttcagacagct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51114217 |
aaaataaattaatttctcatataagtaaatccgtaatcaacaaacaacttgcatttcagagtttatacttcagcagagttgtttcatgtttcagacagct |
51114118 |
T |
|
| Q |
219 |
accaaacaaagcagttgtggctcaagtagaatttcattttctcggttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114117 |
accaaacaaagcagttgtggctcaagtagaatttcattttctcgcttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatat |
51114018 |
T |
|
| Q |
319 |
cattg |
323 |
Q |
| |
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||||| |
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| T |
51114017 |
cattg |
51114013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 27006046 - 27006006
Alignment:
| Q |
281 |
ggagctgttatttctctcaatgatggccttgaaaatatcat |
321 |
Q |
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| T |
27006046 |
ggagctgtaatttttctcagtgatggccttgaaaatatcat |
27006006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 55505389 - 55505337
Alignment:
| Q |
271 |
aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattg |
323 |
Q |
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|||||||||||| |||||||| | ||||||||||||||||||||||| ||||| |
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| T |
55505389 |
aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattg |
55505337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 640726 - 640782
Alignment:
| Q |
267 |
aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattg |
323 |
Q |
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|||||||||||||||||| | ||| | ||||||||||||||||||||||| ||||| |
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| T |
640726 |
aatcaaaaccaggtggagttactatctttctcaatgatggccttgaaaataccattg |
640782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 6006142 - 6006188
Alignment:
| Q |
271 |
aaaaccaggtggagctgttatttctctcaatgatggccttgaaaata |
317 |
Q |
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|
||||||||||||||| ||||| | ||||||||||||||||| ||||| |
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|
| T |
6006142 |
aaaaccaggtggagcagttatctttctcaatgatggccttgtaaata |
6006188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 546724 - 546780
Alignment:
| Q |
267 |
aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattg |
323 |
Q |
| |
|
|||| ||||||| ||||||| |||| | |||||||||||||||| |||||| ||||| |
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|
| T |
546724 |
aatccaaaccagatggagctattatctttctcaatgatggccttaaaaataacattg |
546780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 32151112 - 32151167
Alignment:
| Q |
267 |
aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcatt |
322 |
Q |
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|
||||| ||| ||||||||| ||||| | ||||||||||||||||||||||| |||| |
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| T |
32151112 |
aatcataacgaggtggagcagttatctttctcaatgatggccttgaaaataccatt |
32151167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 43634012 - 43634064
Alignment:
| Q |
271 |
aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattg |
323 |
Q |
| |
|
||||| |||||| ||| |||| | ||||||||||||||||||||||| ||||| |
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| T |
43634012 |
aaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccattg |
43634064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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