View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_76 (Length: 320)
Name: NF16533_low_76
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_76 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 33)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 4560767 - 4560474
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
4560767 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacgaaattgatacaaatgtaaagagggaggac |
4560668 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
4560667 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaa---gatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacga |
4560571 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttacttttatacaatatatata |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560570 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttacttttatacaatatatata |
4560474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 296
Target Start/End: Complemental strand, 4574568 - 4574276
Alignment:
| Q |
2 |
tgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaag |
101 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| | |
|
|
| T |
4574568 |
tgttggccatttttttcggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagagggaggagg |
4574469 |
T |
|
| Q |
102 |
tggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
4574468 |
tggagaaactggtcaatgaattgatgtccggagataaaggaaaga---agatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgag |
4574372 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttacttttatacaatatatata |
296 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
4574371 |
acctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaagcttaagtcacttttatacaatatatata |
4574276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 4598432 - 4598139
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||| || ||||| || ||||||| ||| ||||| ||||||||||||||||||||| ||||||||| |||||| || || ||||| ||||| ||||| |
|
|
| T |
4598432 |
gtgttgtccctttttcgcggatcagcaagccaactgcagatatatttgcaatgaatgggagattggaatcaaaattgaaactaatgtgaagagagaggag |
4598333 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattagagaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||||| | |||||||||| | || || |||||| |||| ||||| ||| ||||| |
|
|
| T |
4598332 |
gtggagaagctggtcaacgaattgatgtcgggagataaaggaaagaa--aatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgag |
4598235 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttacttttatacaatatatata |
296 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||| | ||||| ||| ||||| |||| |
|
|
| T |
4598234 |
acttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaacagaatcaaacttaattaactttaataaaatatttata |
4598139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 4571233 - 4570961
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| |||||||| |||||| |||| ||||||||| | |||||||||| ||||| ||||| | || |
|
|
| T |
4571233 |
gtgttagccattttttgctgatcagccagcaaactgtagatatatctgcaatacatgggagattggaatcgaaatcgatactaatgtgaagagaaatgag |
4571134 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| || |||| |||| |||||| ||||||| |||| ||||| |||||||| |
|
|
| T |
4571133 |
gtggagaatttggtcaatgaattgatggtgggagataaaggaaagaa---gatgaggaaaaatataatggagatgaagaagaaggcggaggaggacacga |
4571037 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagt |
275 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| || ||||| |
|
|
| T |
4571036 |
gacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcacacctaagt |
4570961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4563972 - 4563708
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| ||| ||||| |||||||||| ||||||| | |||||||||| ||||||||||| || || |
|
|
| T |
4563972 |
gtgttggccattctttggtgatcagccaacaaactgtagacttatttacaatgaatgggagattgggatggaaatcgatacgaatgtaaagagagaagag |
4563873 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||||| ||| | |||||||||| || ||| ||||||| || | ||||| |||||| |
|
|
| T |
4563872 |
gtggagaaacttgtcaatgaattgatgtcaggagagaaaggaaaga---agatgcggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacga |
4563776 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaa |
267 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
4563775 |
gagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaatcaa |
4563708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 4579693 - 4579414
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||||||||||||| || ||||| |||| || ||| |||||| | |||||| |||||| ||||||| ||||||| || ||||| ||||| ||||| |
|
|
| T |
4579693 |
gtgttggccatttttcgctgatcacccagtaagctgcagatatttatgcaatacatggaaaattggaattgaaatcgacactaatgtgaagagagaggag |
4579594 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| |||| |||||| || |||||||||||| || ||| ||||||| |||| ||||| |||||||| |
|
|
| T |
4579593 |
gtggagaagctggttaatgaattgatggtgggagagaaagcaaagaa---gatgaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacga |
4579497 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttactttt |
282 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||| |||||| |
|
|
| T |
4579496 |
gacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaatcgaacttaagtgactttt |
4579414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 4585897 - 4585631
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| ||| |||||||||||||||| ||||||| | || | || || ||||| ||||| ||||| |
|
|
| T |
4585897 |
gtgttggccattcattgctgatcagccaacaaactgtagaattatttgcaatgaatgggagattgggatggaagttgacaccaatgtgaagagagaggag |
4585798 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| || |||||||| || |||||||||||| || ||| ||||||| |||| ||||| |||||||| |
|
|
| T |
4585797 |
gtggagaagttggtcaatgaattgatggtgggagagaatggaaagaa---gatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacga |
4585701 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaac |
269 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
4585700 |
gacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaac |
4585631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 4613589 - 4613855
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||| | ||||| | |||| || || ||||| ||||| || || |
|
|
| T |
4613589 |
gtgttggccatttttcgcggatcagccagcaaactgcagatatatatgcaatgaatgggaaattgggatggaaattgacaccaatgtgaagagagatgag |
4613688 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattagagaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||| ||||||||||| | |||||||||||| || ||| ||||||| |||| |||| ||||||||| |
|
|
| T |
4613689 |
gtagagaagctggtcaatgaattgatggtgggagagaaaggaaagaa--aatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgag |
4613786 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaac |
269 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||| || |||||| |||| |||||||||||||| |
|
|
| T |
4613787 |
accaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaaac |
4613855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4516582 - 4516321
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||||||| |||||||| || |||||| |||| || ||||||||||||||||||||| |||||||| |||| ||||| ||||| ||||| ||||| |
|
|
| T |
4516582 |
gtgttggcctttttttgctgagcagccaacaaattgcagatatatttgcaatgaatgggagattggagcagaaattgataccaatgtgaagagagaggag |
4516483 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|||||||| ||| |||||||||| ||| |||||||||||||||| || |||||||||||||||||| ||||||| |||| |||| |||||| | |
|
|
| T |
4516482 |
gtggagaagctgatcaatgaattaatggtgggagataaaggaaagaa---gatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaa |
4516386 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
|||| || ||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||| |
|
|
| T |
4516385 |
gaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaat |
4516321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 4557386 - 4557107
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||| | |||| || || ||||| ||||| || || |
|
|
| T |
4557386 |
gtgttggccattttttgctgatcagccagcaaactgcagatatatttgcaatacatgggagattggcatggaaattgacaccaatgtgaagagagatgag |
4557287 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|| ||||| ||||||||||||||||| | || ||||||||||| || | || ||||| || ||| |||||| |||| ||||| |||||||| |
|
|
| T |
4557286 |
gtagagaatttggtcaatgaattgatggagggggagaaaggaaagaa---gatgtggaaaaagataattgagatgaagacgaaggcggaggaggacacga |
4557190 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttactttt |
282 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
4557189 |
gacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgactttt |
4557107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 4592492 - 4592227
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||| ||| ||||| |||||||||| ||||||| | |||| ||||| ||||||||||| ||||| |
|
|
| T |
4592492 |
gtgttggccattctttagtgatcagccaacaaactgtagacttatttacaatgaatgggagattgggatggaaattgatacgaatgtaaagagagaggag |
4592393 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||||||||||| || |||| ||||||| || ||| ||||||| |||| |||| | |||||| |
|
|
| T |
4592392 |
gtggagaaacttatcaatgaattgatggtgggagagaaaggaaagaa---gatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacga |
4592296 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaa |
268 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
4592295 |
gacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa |
4592227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4617283 - 4617022
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||| || |||||| || |||| |||| |||||| ||||||||| ||||||| | |||||||||| ||||| ||||| ||||| |
|
|
| T |
4617283 |
gtgttggccattttttgccgaccagccaacagactgtagatttatttgtaatgaatgggagattggtatggaaatcgatacgaatgtgaagagagaggag |
4617184 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattagagaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
||| || ||| |||||||| |||| || |||||||||||||||| | || |||||||||||||||| ||||||| |||| |||| | |||| || |
|
|
| T |
4617183 |
ttggcaaagctgatcaatgaagtgatagccggagataaaggaaagaa--aatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactag |
4617086 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
||| || ||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||| |
|
|
| T |
4617085 |
accaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat |
4617022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4480954 - 4480693
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | ||| | ||| |||||||||||||||| |||||||| | |||||||||| ||||| ||||| || || |
|
|
| T |
4480954 |
gtgttggccattctttgccgatcagccacctaaccgtagaattatttgcaatgaatgggagattggactcgaaatcgataccaatgtgaagagagaagat |
4480855 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||||||| | ||||||||||| || |||| ||||||||||| || || |||||||||||||||| ||||||| | || |||| |||||| | |
|
|
| T |
4480854 |
gtggagaggttaatcaatgaattgttggtgggagagaaaggaaagaa---gatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaa |
4480758 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4480757 |
gacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat |
4480693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4602050 - 4601789
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||| |||| |||||| ||||||||| ||||||| | |||||||||||||||| ||||| ||||| |
|
|
| T |
4602050 |
gtgttggcctttttttgccgatcagccaacaaactgtagatttatttgtaatgaatgggagattggtatggaaatcgatacaaatgtgaagagagaggag |
4601951 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||| ||| ||| |||||||| |||| || |||||||||| |||| ||| ||||||||||||||||||| ||||||| | || ||| | ||| | |
|
|
| T |
4601950 |
ttggcgaagctgatcaatgaagtgatagccggagataaaggcaaga---agatgaggcaaaaggccatggagttgaagaagatggcaaaggagagcacta |
4601854 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
||| || ||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
4601853 |
gactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat |
4601789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4626212 - 4625954
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| || ||||||||||||||||||||| ||||||||| |||||||| | ||||| |||||||||| |
|
|
| T |
4626212 |
gtgttggccaaattttgctgatcagccaacaaattgtagatatatttgcaatgaatgggagattggaatggaaatcgatgctaatgtgaagagggagggg |
4626113 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|| ||||||||| |||||| ||||||| | ||||||| ||||||| ||| ||||||||||||||||||| ||||||| |||| |||| | ||| | |
|
|
| T |
4626112 |
gtagagaaactgatcaatgcattgatggcaggagataacggaaaga---agatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacatta |
4626016 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
| || || ||||||||||||||||| |||| ||| ||||||| || || |||||||||||| |
|
|
| T |
4626015 |
gtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgcttaaacaa |
4625954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 3172002 - 3171744
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||| ||||||||||||| ||||| ||| | ||| | ||| ||||||| | |||||||||||||| | |||| ||||| ||||||||||| | ||| |
|
|
| T |
3172002 |
gtgtaggccattttttgctgatcaaccacctaacagtagaattatttgccaagaatggaagattgggatggaaattgataccaatgtaaagagaggggag |
3171903 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|| ||||||||| |||| ||||||||| |||| |||||||||| ||| |||||||| |||||||||| ||||||| |||| |||| ||| || | |
|
|
| T |
3171902 |
gtagagaaactgatcaacgaattgatggtgggagagaaaggaaaga---agatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaa |
3171806 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3171805 |
gatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaa |
3171744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4622403 - 4622145
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||| |||||||| |||||| |||| ||||||||| | ||||| |||| ||||| || || ||||| |
|
|
| T |
4622403 |
gtgttggccatttttcgctgatcagccaacaaactgtagatatatctgcaattcatgggagattggaatcgaaatcaatactaatgtgaaaagagaggag |
4622304 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattagagaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
||| ||| ||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||||| | |||| || | | || || |
|
|
| T |
4622303 |
gtgtcgaatctgatcaatgaattgatgtcgggagataaaggaaagaagatgaga--caaaaggccatggagttgaaggagaaggcagatgagacgaccag |
4622206 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4622205 |
ccctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaa |
4622145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4461384 - 4461123
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||||| | |||| |||||||| || |
|
|
| T |
4461384 |
gtgttggccattctttggtgatcagccagcaaactgtagatttatttgcaacaaatgggagattggacttgaaatcgataaagatgtgaagagggatgag |
4461285 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||| | |||||||| || ||||||||||| |||||| | ||||| |||| ||||| ||| || | |
|
|
| T |
4461284 |
gtggagaagttggtcaacgaattgatggttggagagattggaaagaa---gatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggatacca |
4461188 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
4461187 |
gacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaat |
4461123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 4470064 - 4469809
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||| || |||| |||||||||||||||| |||||||| ||||||||| | |||| ||||| || || |
|
|
| T |
4470064 |
gtgttggccattctttggtgatcagctagcaaattgtagatttatttgcaatgaatgggagattggacttgaaatcgataaagatgtgaagagagatgag |
4469965 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| || ||||||| ||| |||| ||||| ||||||| | ||||| |||| ||||| ||| || | |
|
|
| T |
4469964 |
gtggagaagctagtcaatgaattgatggttggagagaatggaaaga---agatgagggaaaagatcatggagttcaagaagaaggtggaggaggatacca |
4469868 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaa |
258 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
4469867 |
gacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaa |
4469809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 4514993 - 4515253
Alignment:
| Q |
2 |
tgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaag |
101 |
Q |
| |
|
||||||| ||| |||| ||||| ||| ||||||| |||| |||||||||||||||| ||||||| | | ||||||||| ||||| ||||| ||||| | |
|
|
| T |
4514993 |
tgttggcaattctttggtgatcaaccaacaaactgtagatttatttgcaatgaatgggagattgggatcgaaatcgatatgaatgtgaagagagaggagg |
4515092 |
T |
|
| Q |
102 |
tggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattagagaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgaga |
201 |
Q |
| |
|
| || || || ||||||||||||||| |||| |||||||| || | |||| |||||| |||||| |||| || |||| || | |||||| ||| |
|
|
| T |
4515093 |
ttgaaaagcttgtcaatgaattgatggtgggagagaaaggaaataa--aatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactaga |
4515190 |
T |
|
| Q |
202 |
cctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
| ||| || | ||||||| |||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4515191 |
cttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat |
4515253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 4504418 - 4504523
Alignment:
| Q |
153 |
gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttg |
252 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||| |||||| |||| ||| ||||||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
4504418 |
gaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttg |
4504517 |
T |
|
| Q |
253 |
cttaaa |
258 |
Q |
| |
|
|||||| |
|
|
| T |
4504518 |
cttaaa |
4504523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4490226 - 4490481
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | | | ||| ||||||| | |||||| ||||||| | ||||| ||||| ||||||||||| || || |
|
|
| T |
4490226 |
gtgttggccattttttgctgatcaaccacttagcagtagaattatttgcgaagaatgggagattgggatgaaaattgataccaatgtaaagagagaagag |
4490325 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||| |||||||||| ||| |||||||||||| | |||| ||||||| |||| | || |||||||| |
|
|
| T |
4490326 |
gtagagaaactgatcaatgaattgatggtgggagagaaaggaaaga---agatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacga |
4490422 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaa |
258 |
Q |
| |
|
||| || ||| ||||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
4490423 |
gactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa |
4490481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4267037 - 4267295
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| |||| ||||||| |||||||| |||||||| | ||||| |||||||||| ||||| || || |
|
|
| T |
4267037 |
gtgttggccattctttggtgatcagccaacaaactgtagatttatttgctatgaatgggagattggactcgaaatcaatacaaatgtgaagagagatgac |
4267136 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattagagaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
|| ||||| | ||||||||||||||| |||| |||||||| | | || |||||| | | ||||| |||||| |||| || | | |||| || |
|
|
| T |
4267137 |
gtcgagaagttagtcaatgaattgatggtgggagagaaaggaaata--tgatgaagcaaaatgtcttggagttgaagaggaaggcagaagagaacacaag |
4267234 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
|||||| |||| |||||||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4267235 |
acctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
4267295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 4606945 - 4607041
Alignment:
| Q |
186 |
ggaggtggacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttactttt |
282 |
Q |
| |
|
||||| ||||| |||||| || |||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
4606945 |
ggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgactttt |
4607041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4506118 - 4505857
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||||||| || |||| ||||| ||| ||||||| |||| |||||||||||||| | ||||||||| | |||| ||||| ||||| || || || | |
|
|
| T |
4506118 |
gtgttggccgttctttggtgatcaaccaacaaactgtagatttatttgcaatgaattggagattggaatcgaaattgatactaatgtgaatagagaaaat |
4506019 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|| ||||| |||||| ||||| | ||| |||| |||||||| || || |||| |||||| ||||||| |||| || | || ||| ||| || | |
|
|
| T |
4506018 |
gtagagaagctggtcgatgaaattatggttggagagaaaggaaacaa---gatgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaa |
4505922 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
4505921 |
gacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat |
4505857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4256482 - 4256741
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcag-ccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggagga |
99 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||| |||| |||||| | |||||| ||||||||| ||||| |||| ||||| ||||| || || |
|
|
| T |
4256482 |
gtgttggccattttttgctgatcagaccaacaaactgtagatttatttgtagcgaatgggagattggaattgaaatcaatactaatgtgaagagagatga |
4256581 |
T |
|
| Q |
100 |
agtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacg |
198 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||| |||||||||| ||| ||||||||||| |||||| ||||||| ||| ||| | |||| |
|
|
| T |
4256582 |
ggtggagaatctgatcaatgaattgatgtcgggagaaaaaggaaaga---agatgaggcaaaaggtcatggaattgaagaagaagacagagaagaacacc |
4256678 |
T |
|
| Q |
199 |
agacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
|| || | ||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4256679 |
agcccagctggtcattcattgatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
4256741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 4568316 - 4568072
Alignment:
| Q |
2 |
tgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaag |
101 |
Q |
| |
|
|||||||| |||||| | || |||||| || |||| ||||||||||| ||| | | | |||| |||| | |||| ||||||||||| ||||| ||||| | |
|
|
| T |
4568316 |
tgttggccttttttttctgagcagccaacatactgcagatatatttgtaataagttggagatcggaatcgaaattgatacaaatgtgaagagagaggagg |
4568217 |
T |
|
| Q |
102 |
tggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggagg---aggtggacac |
197 |
Q |
| |
|
||||||| ||| | |||||||| ||| || | |||||||| || || ||||||||||||| ||||| ||||||| ||| ||| || |||||| |
|
|
| T |
4568216 |
tggagaagctgatgaatgaattaatggtgggacagaaaggaaaaaa---gatgaggcaaaaggccgtggagttgaagaagaagaaggcagagaaggacac |
4568120 |
T |
|
| Q |
198 |
gagacctggaggttgttcatacatgaacttggagaaagtgattaagga |
245 |
Q |
| |
|
|||||||| | || |||||||||||||||||| |||||||||||||| |
|
|
| T |
4568119 |
aagacctggtgattcttcatacatgaacttggacaaagtgattaagga |
4568072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 4493018 - 4492955
Alignment:
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
4493018 |
acctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat |
4492955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 4260025 - 4260200
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| |||| |||||| || |||||| ||||||||| |||| |||| ||||| || || || || |
|
|
| T |
4260025 |
gtgttggccattttttgctgatcagccaacaaactgtagatttatttgtaacgaatgggagattggaattgaaattaatactaatgtgaaaagagatgag |
4260124 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaaga |
178 |
Q |
| |
|
|||| ||| ||| |||||||| | ||||| |||| ||||||||| ||| ||||||||||| ||||||| |||||| |
|
|
| T |
4260125 |
gtggcgaagctgatcaatgaaattatgtcaggagaagaaggaaaga---agatgaggcaaaaggtcatggagttgaaga |
4260200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 4392052 - 4392154
Alignment:
| Q |
158 |
aaaaggccatggagctgaagaaaaaggaggaggtggacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaa |
257 |
Q |
| |
|
||||||| || ||| ||||||| |||| ||| |||||| ||||||| |||| ||||| |||||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
4392052 |
aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaa |
4392151 |
T |
|
| Q |
258 |
aca |
260 |
Q |
| |
|
||| |
|
|
| T |
4392152 |
aca |
4392154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 4457853 - 4457729
Alignment:
| Q |
3 |
gttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaagt |
102 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| || |||| ||||||||||||||| ||||||| | |||||||||||||||| ||||| || || || |
|
|
| T |
4457853 |
gttggccattctttggtgataagccaacaagttgtagatttatttgcaatgaatgagagattgggatggaaatcgatacaaatgtgaagagagatgaggt |
4457754 |
T |
|
| Q |
103 |
ggagaaactggtcaatgaattgatg |
127 |
Q |
| |
|
|||||| | ||||||||||||||| |
|
|
| T |
4457753 |
ggagaagttagtcaatgaattgatg |
4457729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 4299816 - 4299869
Alignment:
| Q |
208 |
ggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4299816 |
ggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaa |
4299869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 4299671 - 4299743
Alignment:
| Q |
55 |
atggaagattggaaacaaaatcgatacaaatgtaaagagggaggaagtggagaaactggtcaatgaattgatg |
127 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||| | ||| ||||| ||||| || ||| |||||||||||||| |
|
|
| T |
4299671 |
atgggagattggaatcgaaatcgatacaaatgtgaggagagaggaggtggaaaagctgatcaatgaattgatg |
4299743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 16686138 - 16686417
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||| | |||| || || ||||| ||||| || || |
|
|
| T |
16686138 |
gtgttggccattttttgctgatcagccagcaaaatgcagatatatttgcaatgaatgggagattggcatggaaattgacaccaatgtgaagagagatgag |
16686237 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||||| ||| |||| ||||| || || ||| | | |||| ||| | ||| ||| |
|
|
| T |
16686238 |
gtggagaaattggtcaatgaattgatggtgggagagaaaggaaaga---agatgaggaaaaagataattgaactgcaaatgaaggtggacgaagacccga |
16686334 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttactttt |
282 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
16686335 |
gacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgactttt |
16686417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 1674487 - 1674226
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| |||| |||||| ||||||||||||||||| | |||| ||||| ||||| ||||| |||| |
|
|
| T |
1674487 |
gtgttggccattttttgctgatcagccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaattgatacgaatgtgaagagagagggt |
1674388 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||||||| || |||||||||||||| |||| || ||||| || || |||||||||||||||||| ||||||| |||| |||| | |||| | |
|
|
| T |
1674387 |
ttggagaagcttatcaatgaattgatggtgggagagaatggaaaaaa---gatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacacta |
1674291 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
1674290 |
gaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat |
1674226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 20863718 - 20863991
Alignment:
| Q |
5 |
tggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaagtgg |
104 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||| |||||||| ||||| ||||||| | | |||| || || ||||| ||||| ||||| |||| |
|
|
| T |
20863718 |
tggccattttttgctgatcagccgacaaactgcagatacatttgcaacaaatgggagattgggatcgaaattgacaccaatgtcaagagagaggaggtgg |
20863817 |
T |
|
| Q |
105 |
agaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgagacc |
203 |
Q |
| |
|
||| ||||| |||||||||||| |||| ||||||| || || |||||||||| | | ||| ||||||| |||| |||| |||||| ||||| |
|
|
| T |
20863818 |
agatgctggtaaatgaattgatggtgggagagaaaggaaggag---gatgaggcaaaagacaaatgagttgaagaagaaggcagaggaggacacaagacc |
20863914 |
T |
|
| Q |
204 |
tggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttactt |
280 |
Q |
| |
|
| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20863915 |
ggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaaacttaagtgactt |
20863991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 1281375 - 1281114
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||| |||| |||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||| |
|
|
| T |
1281375 |
gtgttggccattttttgctgatcagccaacagactgtagatttatttgtaatgaatggaagattggtatggaaatcgatacaaatgtgaagagagaggag |
1281276 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattagagaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
|||| || || ||||||||||||| || | ||| ||||||||||| ||||| ||||||||||||| ||||||| || ||||| | |||| || |
|
|
| T |
1281275 |
gtggctaagttgatcaatgaattgatagccggggatgaaggaaagaatatgagag--aaaaggccatggaattgaagaaggcggcggaggagaacactag |
1281178 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
1281177 |
accgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaat |
1281114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27999970 - 28000231
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||| |||| |||||| ||||||||||||||||| | |||| |||| ||||| |||| ||||| |
|
|
| T |
27999970 |
gtgttggtcattttttgctgatcagccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaattgatatgaatgtgaagatagaggat |
28000069 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
||||||| || |||||||||||||| |||| || ||||| || || ||||||||||||||||||| |||||||||||| |||| | |||| | |
|
|
| T |
28000070 |
ttggagaagcttatcaatgaattgatggtgggagagaatggaaaaaa---gatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacacta |
28000166 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat |
264 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
28000167 |
gaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaat |
28000231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 24103260 - 24103002
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||| |||| ||||| ||| ||||||| |||| ||||||| |||||||| |||||||| | |||||||||||||||| ||||| || || |
|
|
| T |
24103260 |
gtgttggccattctttggtgatcaaccaacaaactgtagatttatttgctatgaatgggagattggactcgaaatcgatacaaatgtgaagagagatgac |
24103161 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacga |
199 |
Q |
| |
|
|| ||||| | ||||||||||||||| |||| || ||||||| || || |||||||| | ||||| | ||||| |||| || | | |||| | |
|
|
| T |
24103160 |
gtcgagaagttagtcaatgaattgatggtgggagagaacggaaaga---cgatgaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaa |
24103064 |
T |
|
| Q |
200 |
gacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
|| |||| |||| |||||||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
24103063 |
gatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
24103002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 3591 - 3848
Alignment:
| Q |
2 |
tgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaag |
101 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||| |||| ||||||||| |||||| |||||||| ||||||||| |||| ||||| || || | |
|
|
| T |
3591 |
tgttggccattctttggtgatcagccaacaaactgtagatttatttgcaacgaatgggagattggacttgaaatcgatatggatgtgaagagagatgagg |
3690 |
T |
|
| Q |
102 |
tggagaaactggtcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgag |
200 |
Q |
| |
|
||||||| || ||||||||||||| | |||| ||||||||||| || ||||||||||||| ||||| | ||||| |||| |||| | |||| || |
|
|
| T |
3691 |
tggagaagctagtcaatgaattgacggtgggagagaaaggaaagaa---gatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactag |
3787 |
T |
|
| Q |
201 |
acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
||| || ||| |||||||||||||| |||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
3788 |
accaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa |
3848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 4670 - 4815
Alignment:
| Q |
114 |
tcaatgaattgatgtcctgagataaaggaaagaattaga-gaggcaaaaggccatggagctgaagaaaaaggaggaggtggacacgagacctggaggttg |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| ||||||| |||| |||| | |||| || |||| || || |
|
|
| T |
4670 |
tcaatgaattgatgtcgggagataaaggaatga---agatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctg |
4766 |
T |
|
| Q |
213 |
ttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaa |
261 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4767 |
ttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa |
4815 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 3086681 - 3086535
Alignment:
| Q |
1 |
gtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacaaaatcgatacaaatgtaaagagggaggaa |
100 |
Q |
| |
|
|||||||||||||| || |||||| ||| |||||| |||||||| |||||| |||| ||||||||| |||||||||| ||||| ||||| ||||| |
|
|
| T |
3086681 |
gtgttggccattttatggagatcaaccaataaactgtagatatatctgcaatatatgggagattggaattgaaatcgatactaatgtgaagagagaggag |
3086582 |
T |
|
| Q |
101 |
gtggagaaactggtcaatgaattgatgtcctgagataaaggaaagaa |
147 |
Q |
| |
|
|| ||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
3086581 |
gtcgagaagctgatcaatgaattgatggtgggagataaaggaaagaa |
3086535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 3086476 - 3086426
Alignment:
| Q |
208 |
ggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaa |
258 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
3086476 |
ggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa |
3086426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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