View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_low_78 (Length: 318)

Name: NF16533_low_78
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_low_78
NF16533_low_78
[»] scaffold0168 (1 HSPs)
scaffold0168 (19-297)||(25235-25513)


Alignment Details
Target: scaffold0168 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 25235 - 25513
Alignment:
Q  19 aatgcaggtggtaaaaaactatatgtacctcgagtggaggataaaaatagtcacatgcgtatgcttaacatatcgcgtattgatgatcttgttgcaaact 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25235 aatgcaggtgataaaaaactatatgtacctcgagtggaggataaaaatagtcacatgcgtatgcttaacatatcgcgtattgatgatcttgttgcaaact 25334  T
Q  119 caatgaacatcttagaaccaactccagttgatgccgatggaaatgcacgtcaagatggtacttctctctcttttgttgttcgattttttcttgtcattta 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| ||    
T  25335 cgatgaacatcttagaaccaactccagttgatgccgatggaaatgcacgtcaagatggtacttctctctctttcattgttcgattttttcttttcatgta 25434  T
Q  219 ctgtccaattctcttatcttacttttgctgtcaaagattttgccaactttcaaaatgccaccatggtcaactcatacta 297  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  25435 ctgtccaattctcttatcttactttagctgtcaaagatgttgccaactttcaaaatgccaccattgtcaactcatacta 25513  T

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