View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_79 (Length: 316)
Name: NF16533_low_79
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 52446231 - 52445948
Alignment:
| Q |
15 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
114 |
Q |
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| T |
52446231 |
cacaaagcaatacaacacaaacacaaagtgaatccgaaagaacgaaacaacgtcacatacacatgcactgcgactatgaatcatcaatgataaaatgaaa |
52446132 |
T |
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| Q |
115 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
214 |
Q |
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| T |
52446131 |
caatctaaaaagaacaaaaccagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataa |
52446032 |
T |
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| Q |
215 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatg |
298 |
Q |
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| T |
52446031 |
taaaataatgaacatcaacacaactatacattatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacatg |
52445948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 52447167 - 52446890
Alignment:
| Q |
15 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
114 |
Q |
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| T |
52447167 |
cacaaagcaatacaacacaagcacaaagtgaatctgaaagaacaaaacaacgtaacaaacacatacattgcgattatgaatcatcaataataaaatgaaa |
52447068 |
T |
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| Q |
115 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
214 |
Q |
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| T |
52447067 |
caatctacaaa---caaaaccacatacacatccattactattgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataa |
52446972 |
T |
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| Q |
215 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacaca |
296 |
Q |
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|| || |||||||||||||||||| |||||||| ||||||| | ||||||||||||||| |||||||||||||||||||| |
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| T |
52446971 |
tagaacaatgaacatcaacataaccatacattacgattgtggatagagcatcaactcaattgaagcattatacaacaacaca |
52446890 |
T |
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