View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_80 (Length: 315)
Name: NF16533_low_80
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_80 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 45242766 - 45243069
Alignment:
| Q |
1 |
agaatatagatataaacagca---gcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttctaaacaacatt |
97 |
Q |
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| T |
45242766 |
agaatatagatataaacaacaacagcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttctaaacaacatt |
45242865 |
T |
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| Q |
98 |
tttcttatacacggataccacagcagggtggaatagtctcaactcagagataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaa |
197 |
Q |
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| T |
45242866 |
tttcttatacacggataccacagcagggtggaatagtctcaactcagaaataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaa |
45242965 |
T |
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| Q |
198 |
gaggnnnnnnnntcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacaaa |
297 |
Q |
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| T |
45242966 |
gaggaaaaaaaatcaattcatatcgaggttctttctttaactaaatttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacaca |
45243065 |
T |
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| Q |
298 |
acat |
301 |
Q |
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|||| |
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| T |
45243066 |
acat |
45243069 |
T |
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Target: scaffold0667 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 2000 - 2058
Alignment:
| Q |
120 |
gcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagt |
176 |
Q |
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| T |
2000 |
gcagggtggaatagtctcaacattcagaaataagctggtcaaaataattatttaggagt |
2058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 8580242 - 8580177
Alignment:
| Q |
210 |
tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaat |
275 |
Q |
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| T |
8580242 |
tcaattcatattgatattctttctttaacctaatttataagaaaatggatcattgtctaacttaat |
8580177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 9061925 - 9061857
Alignment:
| Q |
112 |
ataccacagcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagtga |
178 |
Q |
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| T |
9061925 |
ataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataattatttaggagtga |
9061857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 9315508 - 9315536
Alignment:
| Q |
112 |
ataccacagcagggtggaatagtctcaac |
140 |
Q |
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| T |
9315508 |
ataccacagcagggtggaatagtctcaac |
9315536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 12019637 - 12019601
Alignment:
| Q |
104 |
atacacggataccacagcagggtggaatagtctcaac |
140 |
Q |
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| T |
12019637 |
atacacagataccacaacagggtggaatagtctcaac |
12019601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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