View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_83 (Length: 311)
Name: NF16533_low_83
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 40551743 - 40552025
Alignment:
| Q |
14 |
aatactcgaaatagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgcgaa |
113 |
Q |
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| T |
40551743 |
aatactcgaaatagaaaactcggtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagatatgaatgcgaa |
40551842 |
T |
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| Q |
114 |
ataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaact |
213 |
Q |
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| T |
40551843 |
ataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtgatctaaacaactgaaaacaataataccacagaact |
40551942 |
T |
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| Q |
214 |
actgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagataaa |
296 |
Q |
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| T |
40551943 |
actgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagataaa |
40552025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 40569110 - 40569173
Alignment:
| Q |
210 |
aactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaa |
275 |
Q |
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| T |
40569110 |
aactactgaaacagtcggtatatgactaatttttcaaaaactgcata--tataatttagtttaaaa |
40569173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 40568971 - 40569059
Alignment:
| Q |
21 |
gaaatagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgc |
110 |
Q |
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| T |
40568971 |
gaaacagaaaactcagtgctgcaagtcatccacaattagtgatatgtatgcctgctgctgaatagaattagtaaac-aagacatgaatgc |
40569059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 15110325 - 15110539
Alignment:
| Q |
24 |
atagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgcgaaataaccatgc |
123 |
Q |
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| T |
15110325 |
atagacaactcggtgctacaagccatccatatttagtgatttgtatggctgctattgaatagaatacataaacgacgagatgaatatgaaatattcacgc |
15110424 |
T |
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| Q |
124 |
ataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaactactgaaacaa |
223 |
Q |
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| T |
15110425 |
ataagagtacaaatgtaagtacgtaaatttgtcaccctatcccaattttagagtaatccgaacaaccaaaaacaataataccacaaaactattaaaacaa |
15110524 |
T |
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| Q |
224 |
tccgtatatgattaa |
238 |
Q |
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| T |
15110525 |
tccgtatataattaa |
15110539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 15110018 - 15109895
Alignment:
| Q |
81 |
aatagaatacataaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaat |
180 |
Q |
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|||||||||||||||| |||| ||||||| |||||| ||| | | |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
15110018 |
aatagaatacataaacgaagagatgaatgtgaaatatccactcgttagagtacaaatttaagtacgtaaatttgtcaccctatcccaatgttagagtaat |
15109919 |
T |
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| Q |
181 |
ctaaacaactgaaaacaataatac |
204 |
Q |
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| T |
15109918 |
ccaaacaaccaaaaacaagaatac |
15109895 |
T |
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