View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_85 (Length: 306)
Name: NF16533_low_85
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 43376629 - 43376340
Alignment:
| Q |
12 |
gtggtgggccatagcattgcctatccgttattgctgatgaacttggtctgaatttccatccaggtggaagaaacactcatcagatcaaactctgatcaga |
111 |
Q |
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| T |
43376629 |
gtggtgggccatagcattgcctatccgttattgctgatgaacttggtctgaatttccatccaggtggaagaaacactcatcagatcaaactctgatcaga |
43376530 |
T |
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| Q |
112 |
accactttcaacttcccaa-------------acatgtccacacaactagaaaacgcgttggtagaaatccaaatccccgaacaaaagcttctcccaaac |
198 |
Q |
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| T |
43376529 |
accactttcaacttcccaatttatcttcccaaacatgtccacacaactagaaaacgcgttggtagaaatccaaatccccgaacaaaagcttctcccaaac |
43376430 |
T |
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| Q |
199 |
ggaaccccattcccagcaatcgtaactccacgtacactccctctaaacgcaacacacacaatcaaaacccacaaaccctatctcgaatcc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
43376429 |
ggaaccccattcccagcaatcgtaactccacgtacactccctctaaacgcaacacacacaatcaaaacccacaaaccgtatttcgaatcc |
43376340 |
T |
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