View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_89 (Length: 302)
Name: NF16533_low_89
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 194594 - 194311
Alignment:
| Q |
16 |
atacagaaagatttatgcaagttttggaactgtcccaggatcgcccttctaagaaatggatagggagtggtgggatacaagaagctagggacttgatcat |
115 |
Q |
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| T |
194594 |
atacagaaaggtttatgcaagttttggaactgtcccaagatcgcccttctaagaaatggatagggagtggtgggatacaagaagctagggacttgatcat |
194495 |
T |
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| Q |
116 |
aattcaacagaggcatacatggcagctgaacatgaatatggggatgggattgagaagggaaagaaactaatttatgatagtaatgatagtaagaagagaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
194494 |
aattcaacagaggcatacatggcagctgaacatgaatatggggatgggattgagaagggaaagaaactaatttatgatagtaatgatagtaagtagagaa |
194395 |
T |
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| Q |
216 |
ggaagcacatgattgaatccaaagcaaagcagaagggagggaaagggattgagcaacatcagaaacccatagaatgaaaggatt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
194394 |
ggaagcacatgattgaatccaaagcaaagcagaagggagggaaagggattgagcaacatcagaaacccatggaatgaaaggatt |
194311 |
T |
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