View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_94 (Length: 295)
Name: NF16533_low_94
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_94 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 5067328 - 5067591
Alignment:
| Q |
12 |
atgaacataggaacattagactttatagaacacatgcaccaaagtaaccaatcaaatgatgatgatggnnnnnnnnnnnnnnnnncatgtgaagttgttt |
111 |
Q |
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| T |
5067328 |
atgaacataggaacattagactt-atagaacacatgcaccaaagtaaccaatcaaatgatgatgatggaaaaacaaaacaaaaaacatgtgaagttgttt |
5067426 |
T |
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| Q |
112 |
atgatttttaccttgacctttgatttttcatgaagttaggaccttgtttaagaaactcggttgtttctccaaaaacaggccaccccattgttccttgtgg |
211 |
Q |
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| T |
5067427 |
atgatttttaccttgacctttgatttttcatgaagttaggaccttgtttaagaaactcagttgtttctccaaaaacaggccaccccattgttccttgtgg |
5067526 |
T |
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| Q |
212 |
caaacctttccttctgtatcttacctcattccacttcaaaagagcagagcaaaaacagaacacaa |
276 |
Q |
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| T |
5067527 |
caaacctttccttctgtatcttacctcattccacttcaaaagagcagagcaaaaacagaacacaa |
5067591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 5591605 - 5591759
Alignment:
| Q |
116 |
tttttaccttgacctttgatttttcatgaagttaggaccttgtttaagaaactcggttgtttctccaaaaacaggccaccccattgttccttgtggcaaa |
215 |
Q |
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|||||||||| | ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
5591605 |
tttttaccttaatctttggtttttcatgaaatttggaccttgtttaagaaactcagttgtttctccaaaaactggccatcccattgttccaggtggcaaa |
5591704 |
T |
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| Q |
216 |
cctttccttctgtatcttacctcattccacttcaaaagagcagagcaaaaacaga |
270 |
Q |
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| T |
5591705 |
cctttcttcctataccttacttcattccacctcaagagagcagagcaaaaacaga |
5591759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 976067 - 976221
Alignment:
| Q |
116 |
tttttaccttgacctttgatttttcatgaagttaggaccttgtttaagaaactcggttgtttctccaaaaacaggccaccccattgttccttgtggcaaa |
215 |
Q |
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|||||||||| | ||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
976067 |
tttttaccttaatctttggtttttcatgaaacttggaccttgtttaagaaactcagttgtttctccaaaaactggccaccccattgttccaggtggcaaa |
976166 |
T |
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| Q |
216 |
cctttccttctgtatcttacctcattccacttcaaaagagcagagcaaaaacaga |
270 |
Q |
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| T |
976167 |
cctttcttcctataccttacttcattccatctcaagagagcagagcaaaaacaga |
976221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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