View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_low_95 (Length: 294)
Name: NF16533_low_95
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_95 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 39726952 - 39727233
Alignment:
| Q |
1 |
atttgccatgagttgtctcctttgtttaaccagtctggtactgctagacttgtccatgcttggtatgctaccggtaatgtgtttaccggtggagcagcca |
100 |
Q |
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| T |
39726952 |
atttgccatgagttgtctcctttgtttaaccagtctggtactgctagacttgtccatgcttggtatgctaccggtaatgtgtttaccggtggagcagcca |
39727051 |
T |
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| Q |
101 |
tgattaatgtttgcttagtttatatattgttactattacaattgcacactcaataaatactctatgaacttggtttatatatacagagagctaagatacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39727052 |
tgattaatgtttgcttagtttatatattgttactattacaattgcacactcaataaatactctatgaacttggtttatatatacagagagctaagatacg |
39727151 |
T |
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| Q |
201 |
tgtatacgtgactatgtgatgtaaaagagctaaaccaaagaaccgttgacctacaaaaattgtttaaggtatcatttttata |
282 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39727152 |
tgtatacgtgaatatgtgatgtaaaagagctaaaccaaagaaccgttgacctacaaaaattgtttaaggtatcatttttata |
39727233 |
T |
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Back To:
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25671491 - 25671529
Alignment:
| Q |
1 |
atttgccatgagttgtctcctttgtttaaccagtctggt |
39 |
Q |
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|||||||||| ||||||||||||||||||||| |||||| |
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| T |
25671491 |
atttgccatgcgttgtctcctttgtttaaccattctggt |
25671529 |
T |
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