View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_low_97 (Length: 288)
Name: NF16533_low_97
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_low_97 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 8846003 - 8845744
Alignment:
| Q |
12 |
gaagaaaatcctgatgacttgtctgccatttgggaagaaatggacactgctatggcagcaagttgtcttcttgatggaactgaggtttgtgacaattgct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8846003 |
gaagaaaatcctgatgacttgtctgccatttgggaagaaatggatactgctatggcagcaagttgtcttcttgatggaactgaggtttgtgacaattgct |
8845904 |
T |
|
| Q |
112 |
tttacctatatttataatatttgttttggagtttaattttaatacgctatcggtgtaaaaagttttatactaccaacaaattacaacatatcatattttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8845903 |
tttacctatatttataatatttgttttggagtttaattttaata-gctatcggtgtaaaaagttttatactaccaacaaattacaacatatcatattttt |
8845805 |
T |
|
| Q |
212 |
aatgatttgaaaatatatatgaattaaattatgtgattttgattttatcttcttttctaag |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8845804 |
aatgatttgacaatatatatgaattaaattatgtgattttggttttatcttcttttctaag |
8845744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 76 - 272
Target Start/End: Original strand, 8821934 - 8822129
Alignment:
| Q |
76 |
gtcttcttgatggaactgaggtttgtgacaattgcttttacctatatttataatatttgttttggagtttaattttaatacgctatcggtgtaaaaagtt |
175 |
Q |
| |
|
|||||||||||||||||||||| |||| | | | |||| | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
8821934 |
gtcttcttgatggaactgaggtgtgtggaagtcggttttgcatatatttattatatttgttttggagtttaatttttataccctatcggtgtaaaaaggt |
8822033 |
T |
|
| Q |
176 |
ttatactaccaacaaattacaacatatcatatttttaatgatttgaaaatatatatgaattaaattatgtgattttgattttatcttcttttctaag |
272 |
Q |
| |
|
| ||||||||||||||||| ||| |||| ||||||| ||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
8822034 |
t-atactaccaacaaattataacctatcgtattttttatgatctgacaatatatatgaattaaattatgtgattttggttttttcttcttttctaag |
8822129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 270
Target Start/End: Complemental strand, 8810054 - 8809858
Alignment:
| Q |
76 |
gtcttcttgatggaactgaggtttgtgacaattgcttttacctatattta--taatatttgtttt-ggagtttaattttaatacgctatcggtgtaaaaa |
172 |
Q |
| |
|
|||||||||||||| ||||||| | || |||| |||||||||||||||| || ||||| |||| ||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
8810054 |
gtcttcttgatggacctgaggtgtttggcaatcacttttacctatatttaaatattatttttttttggagtttaattttgatatgctattggtgtaaaaa |
8809955 |
T |
|
| Q |
173 |
gttttatactaccaacaaattacaacatatcatatttttaatgatttgaaaatatatatgaattaaattatgtgattttgattttatcttcttttcta |
270 |
Q |
| |
|
|||| |||||||||||| |||||||| |||| |||| || ||||| ||| |||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
8809954 |
gttt-atactaccaacatattacaacctatcgtattattgatgatctgacaatatatatgaattaatttatgtgattttggttttttcttcttttcta |
8809858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 36373858 - 36373948
Alignment:
| Q |
14 |
agaaaatcctgatgacttgtctgccatttgggaagaaatggacactgctatggcagcaagttgtcttcttgatggaactgaggtttgtgac |
104 |
Q |
| |
|
||||||||||||||| ||| | | ||| |||||||||||||| || ||| || || |||||| |||||||||||||| |||||| |||||| |
|
|
| T |
36373858 |
agaaaatcctgatgatttggccgacatgtgggaagaaatggaaacagctttgacatcaagttatcttcttgatggaaatgaggtgtgtgac |
36373948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 7646405 - 7646352
Alignment:
| Q |
141 |
agtttaattttaatacgctatcggtgtaaaaagttttatactaccaacaaatta |
194 |
Q |
| |
|
||||| ||||| |||| |||||||||||||| |||||||| || |||||||||| |
|
|
| T |
7646405 |
agtttgattttgatacactatcggtgtaaaatgttttatattatcaacaaatta |
7646352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 32251623 - 32251527
Alignment:
| Q |
12 |
gaagaaaatcctgatgacttgtctgccatttgggaagaaatggacactgctatggcagcaagttgtcttcttgatggaactgaggtttgtgacaatt |
108 |
Q |
| |
|
||||||||| ||||||| ||| |||| | |||||||||||| | || ||| || || |||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
32251623 |
gaagaaaatgctgatgatttggatgccttgtgggaagaaatgaatacagctttgacatcaagttatcttcttgatggaactgcggtgtgtgacaatt |
32251527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 32229073 - 32229035
Alignment:
| Q |
70 |
caagttgtcttcttgatggaactgaggtttgtgacaatt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
32229073 |
caagttatcttcttgatggaactgaggtgtgtgacaatt |
32229035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University