View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16534_low_4 (Length: 237)
Name: NF16534_low_4
Description: NF16534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16534_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 46289264 - 46289476
Alignment:
| Q |
1 |
aaagcacttaaaagcccgcgaatatttcccgccaccgattcaccacccacctacaaagacactttcgcttcatt-cccaatcacttcacataaacnnnnn |
99 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
46289264 |
aaagcactgaaaagcccgcgaatatttcccgccaccgattcaccacccacctacaaagacactttcgtttcatttcccaatcacttcacataaaccttct |
46289363 |
T |
|
| Q |
100 |
nnnnnnnnnnnnnnnnngttaaaccctaatctaatctaatagctccaatggatgtaaacttcgacggattcaatgataaactccccgagctcaaactagg |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46289364 |
tcttcttcttctct---gttaaaccctaaactaatctaatagctccaatggatgaaaacttcgacggattcaatgataaactccccgagctcaaactagg |
46289460 |
T |
|
| Q |
200 |
tttcgcatttcccccc |
215 |
Q |
| |
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|||||||||||||||| |
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| T |
46289461 |
tttcgcatttcccccc |
46289476 |
T |
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