View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16535_high_1 (Length: 698)
Name: NF16535_high_1
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 645; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 16 - 691
Target Start/End: Original strand, 36424263 - 36424939
Alignment:
| Q |
16 |
ttgcagacagaaaataaaagtataaaactaccttgaaatctccatgcatgttacgatgcaaattacatataaaaagaaaccactataaatacatcattcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424263 |
ttgcagacagaaaataaaagtataaaactaccttgaaatctccatgcatgttacgatgcaaattacatataaaaagaaaccactataaatacatcattcc |
36424362 |
T |
|
| Q |
116 |
tcaaatttgtaaaaac-catatctttgattcattgatctagcttttcctcaataaccccaaattttgaacattccatcaaatcatacacaatgtcttctt |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424363 |
tcaaatttgtaaaaacacatatctttgattcattgatctagcttttcctcaataacctcaaattttgaacattccatcaaatcatacacaatgtcttctt |
36424462 |
T |
|
| Q |
215 |
ccacagcttcaaaactcctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtgatccagacatccttactgacttcatagcccc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36424463 |
ccacagcttcaaaactcctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtgatccagacatccttactgacttcatagcccc |
36424562 |
T |
|
| Q |
315 |
aaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtagcattgaaagca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
36424563 |
aaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtggcattgaaagca |
36424662 |
T |
|
| Q |
415 |
agtaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgtt |
514 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
36424663 |
agcaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacacacacaccctcgtt |
36424762 |
T |
|
| Q |
515 |
cagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtt |
614 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36424763 |
cagccgagctactcttcctcgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtt |
36424862 |
T |
|
| Q |
615 |
tgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
36424863 |
tgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggcctttg |
36424939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 184 - 691
Target Start/End: Original strand, 36420908 - 36421415
Alignment:
| Q |
184 |
cattccatcaaatcatacacaatgtcttcttccacagcttcaaaactcctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtg |
283 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | |||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
36420908 |
cattctatcaaatcatacacaatgtcttcttccacaacatcaaaaatgctaacactaatcatatctgcatttgccattgtgcaaataacattagctggtg |
36421007 |
T |
|
| Q |
284 |
atccagacatccttactgacttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacat |
383 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36421008 |
atccggacatcctcactgacttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacat |
36421107 |
T |
|
| Q |
384 |
acaaccctcatttttcgtagcattgaaagcaagtaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctgga |
483 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36421108 |
acaaccctcatttttcgtggcattgaaagcaagcaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctgga |
36421207 |
T |
|
| Q |
484 |
accatcaatccaccacatacacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctat |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
36421208 |
accatcaatccaccacatacacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggttttgttgacacaaccaataagctat |
36421307 |
T |
|
| Q |
584 |
acactcaaacacttcaacccggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttc |
683 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36421308 |
tcactcagacactacaacctggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttc |
36421407 |
T |
|
| Q |
684 |
agcctttg |
691 |
Q |
| |
|
||||||| |
|
|
| T |
36421408 |
ggcctttg |
36421415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 37 - 691
Target Start/End: Original strand, 36427257 - 36427912
Alignment:
| Q |
37 |
ataaaactaccttgaaatctccatgcatgttacgatgcaaattacatataaaaagaaaccactataaatacatcattcctcaaatttgtaaaaac-cata |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| ||||| |||| |
|
|
| T |
36427257 |
ataaaactaccttgaaatctccatgcatgttacgatgcaaattacatataaaaagaaatcactataaatacatcatttctttaatttgtcaaaacacata |
36427356 |
T |
|
| Q |
136 |
tctttgattcattgatctagcttttcctcaataaccccaaattttgaacattccatcaa---atcataca-caatgtcttcttccacagcttcaaaactc |
231 |
Q |
| |
|
|||| ||||||||||| | |||| ||| ||||| |||||| |||||||||| | |||||| | | ||||||| || |||||||||| | |
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|
| T |
36427357 |
tcttcaattcattgatccaactttcccttg-taacctcaaattacaaacattccatttattaatcataaagctatgtcttt---catagcttcaaaaatg |
36427452 |
T |
|
| Q |
232 |
ctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtgatccagacatccttactgacttcatagccccaaatggaacccaagttg |
331 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||||||||||| |
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|
| T |
36427453 |
ctaacactaatcatatctgcatttgccattgtgcaaataacactagctagtgatccagacatcctcactgatttcatagccccaactggaacccaagttg |
36427552 |
T |
|
| Q |
332 |
atggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtagcattgaaagcaagtaaaaaagaatttcc |
431 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||| | |||||||||||| |||||| |||| ||| ||||||||||| ||| ||||||||| |
|
|
| T |
36427553 |
atggcaacttcttcacattcaccggtttccgcgcacttcttccaccaaacatacagccctcaactttcaaagccttgaaagcaagcaaagcagaatttcc |
36427652 |
T |
|
| Q |
432 |
agctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttc |
531 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36427653 |
agctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccatcaatccaccacacacacaccctcgttcagccgagctactcttc |
36427752 |
T |
|
| Q |
532 |
cttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtttgtgtttccaaagggac |
631 |
Q |
| |
|
|| | ||||||||||| ||||||||||| || ||||| || || ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36427753 |
ctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcactcaaacactacaacccggtgacatgtttgtgtttccaaagggac |
36427852 |
T |
|
| Q |
632 |
ttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
691 |
Q |
| |
|
||||||||||||| |||||| || ||||| ||||| ||||||| |||||||| ||||||| |
|
|
| T |
36427853 |
ttgttcattttcagttcaatgctgatacttcaaaacctgctttggctttttctgcctttg |
36427912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 572
Target Start/End: Original strand, 19148343 - 19148475
Alignment:
| Q |
440 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttccttgttaa |
539 |
Q |
| |
|
||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| ||||| | |
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|
| T |
19148343 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
19148442 |
T |
|
| Q |
540 |
aggttcccttaatgttggtttcgttgacacaac |
572 |
Q |
| |
|
|||||| ||| | ||||| || ||||||||||| |
|
|
| T |
19148443 |
aggttcacttcaagttgggtttgttgacacaac |
19148475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 440 - 570
Target Start/End: Complemental strand, 19144650 - 19144520
Alignment:
| Q |
440 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttccttgttaa |
539 |
Q |
| |
|
||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| ||||| | |
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|
| T |
19144650 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
19144551 |
T |
|
| Q |
540 |
aggttcccttaatgttggtttcgttgacaca |
570 |
Q |
| |
|
|||||| ||| | ||||| || ||||||||| |
|
|
| T |
19144550 |
aggttcacttcaagttgggtttgttgacaca |
19144520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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