View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_high_19 (Length: 347)
Name: NF16535_high_19
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 10599233 - 10599564
Alignment:
| Q |
16 |
ttcttctcaaacaaaacatcaaaacactcgcgagcaccttccattctcccagaccttgcatacacactaacaagaccattccctacacactcaatcgcag |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
10599233 |
ttcttctcaaacaaaacatcaaaacacttgcgagcagattccattcttccagactttgcatacacactaacaagaccattccctacacaatcaattgcag |
10599332 |
T |
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| Q |
116 |
aaagacctaatttaatcgtttgcccgtgaacttgttcaccaaaatcaaaattaggaagactcgcacaagccttaagaacaccagaaaacgtaaagcaatt |
215 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| || |
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| T |
10599333 |
aaagacctaatttaatcgtttgcccatgaacctgttcaccaaaatcaaaatcaggaagactcgcacaagccttaagaacaccggagaacgtaaagcagtt |
10599432 |
T |
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| Q |
216 |
tggcgcaacacaaccctgaagcaacatatcgctaaacaatctcatagcttcccgttcatatcccccaccgcctcttacatatccattaataagtgccgtc |
315 |
Q |
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|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||| |||||| |
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| T |
10599433 |
cggcgcaacaccaccctgaagcaacatattactaaacattctcatagcttcccgttcatatccaccaccgcctcgtacatatccattaacaagagccgtc |
10599532 |
T |
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| Q |
316 |
cacgacatcacattatgctctctcataccatc |
347 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
10599533 |
cacgacatcacattatgctccctcataccatc |
10599564 |
T |
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