View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_high_23 (Length: 340)
Name: NF16535_high_23
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 324
Target Start/End: Complemental strand, 9519409 - 9519090
Alignment:
| Q |
5 |
aaaaacaaacaactcaattcaagaaatttaacaaagaagaggtcataatataaacacggacgccatatttttcaaacaataaactatctccaagaggaaa |
104 |
Q |
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| T |
9519409 |
aaaaacaaacaactcaattcaagaaatttaacaaagaagaggtcataatataaacacggacgccatatttatttaacaataaactatctcaaagaggaaa |
9519310 |
T |
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| Q |
105 |
ttttgatagtctctacaatctcctccaccttccgattcttagaagaaaaaataaccacattatgtgctttttatattttcaaaattgttgcatgacaaat |
204 |
Q |
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| T |
9519309 |
ttttgatagtctctacaatctcctccaccttccgattcttagaagaaaaaataaccacattatgcgcttttcatattttcaaaattgttgcatgacaaat |
9519210 |
T |
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| Q |
205 |
aagtgttaagttcatccctctcatgcctttttgcaaacaacgaggatgaaaagtaatcaaggagggagacacttacatgtatgtagaatggttggctata |
304 |
Q |
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| T |
9519209 |
aagtgttaagttcgtccctctcatgcctttttgcaaacaacgaggatgaaaagtaatcaaggagggagacacttacatgtatgtagaatggttggctata |
9519110 |
T |
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| Q |
305 |
ggttttttgattgatgtacc |
324 |
Q |
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| T |
9519109 |
ggttttttgattgatgtacc |
9519090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 73 - 312
Target Start/End: Complemental strand, 9527653 - 9527410
Alignment:
| Q |
73 |
ttttcaaacaataaactatctccaagaggaaattttgatagtctctacaatctcctccaccttccgattcttagaagaa--aaaataaccacattatgtg |
170 |
Q |
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| T |
9527653 |
ttttctaacaataaaccatctccaagaggaaattttgatggtctcttcaatctcctccaccttccaattcttagaagaagaaaaaaaaccacattttgtg |
9527554 |
T |
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| Q |
171 |
ctttttatattttcaaaattgttgcatgacaaataagtgttaagttcatccctctcatgcctttttgcaaacaacgaggatgaaaagtaatcaaggaggg |
270 |
Q |
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| T |
9527553 |
cttctcaaattttcaaaagtgttgcatgacaaataagtgttaagtccggccctctgatgcctttttgccaacgaagaggatgaaaagcaatcaagaagag |
9527454 |
T |
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| Q |
271 |
agaca--cttacatgtatgtagaatggttggctataggtttttt |
312 |
Q |
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| T |
9527453 |
agacatcattacttgtatgtagaatggttggctatagatttttt |
9527410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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