View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_high_25 (Length: 335)
Name: NF16535_high_25
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 40155035 - 40155339
Alignment:
| Q |
13 |
cagaactctccgttgaagtcaccaattaccgcaccttcgtggaaattgttatctatagcatgactgcgtgcagtggaagttagatatgttccctgacagg |
112 |
Q |
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| T |
40155035 |
cagaactctccgttgaagtcaccaattaccgcaccttcgtggaaattgttatctatagcatgactgcgtgcagtggaagttagatatgttccctgacagg |
40155134 |
T |
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| Q |
113 |
ttaatctaagatcagtaaagatacggaagactactgacaatatgaaggaactgtggaacttcgacatgttgcatttacctgcccaacccataatatagaa |
212 |
Q |
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| T |
40155135 |
ttaatctaagatcagtaaagatacggaagactactgacaatatgaaggaactgtggaacttcgacatgttgcatttacctgcccaacccataatatagaa |
40155234 |
T |
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| Q |
213 |
gcgcaaaacccaagataaacagaagccggaaccaacgtatacctgcataacagtcgctcaatggtcaagcatgcatatattattcagccatatacacatt |
312 |
Q |
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| T |
40155235 |
gcgcaaaacccaagataaacagaagccggaaccaacgtatacctgcataacagtcgctcaatggtcaagcatgcatatattattcagccatatacacatt |
40155334 |
T |
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| Q |
313 |
catat |
317 |
Q |
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||||| |
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| T |
40155335 |
catat |
40155339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 40148491 - 40148764
Alignment:
| Q |
8 |
cagcacagaactctccgttgaagtcaccaattaccgcaccttcgtggaaattgttatctatagcatgactgcgtgcagtggaagttagatatgttccctg |
107 |
Q |
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|||| ||||| || |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40148491 |
cagcccagaattccccgttgaagtcaccaattacagcaccttcgtggagattgttatctatagcatgactgtgtgcagtggaagttagatatgttccctg |
40148590 |
T |
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| Q |
108 |
acaggttaatctaagatcagtaaagatacggaagactactgacaatatgaaggaactgtggaacttcgacatgttgcatttacctgcccaacccataata |
207 |
Q |
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| T |
40148591 |
aaagttcaaactaaaatcagtaaatacatggaagattaatgacaatatgaaggaattgtggaacttcaacatgt---atgtacctgtccaacccatatta |
40148687 |
T |
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| Q |
208 |
tagaagcgcaaaacccaagataaacagaagccggaaccaacgtatacctgcataacagtcgctcaatggtcaagcat |
284 |
Q |
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||||||| |||||||||||||| ||||| ||||| |||| ||||||||| | ||||||| || ||||||||||||| |
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| T |
40148688 |
tagaagcacaaaacccaagatacacagaggccggtaccagtgtatacctgaacaacagtcactaaatggtcaagcat |
40148764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 40110285 - 40110532
Alignment:
| Q |
13 |
cagaactctccgttgaagtcaccaattaccgcaccttcgtggaaattgttatctatagcatgactgcgtgcagtggaagttagatatgttccctgacagg |
112 |
Q |
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||||| ||||| |||||||| ||||||| || |||||||||| ||||||||| ||||| |||||| || |||||||||| |||||||||||||||| |
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| T |
40110285 |
cagaattctccattgaagtcgccaattattgcgccttcgtggagattgttatcggcagcataactgcgagctgtggaagttaaatatgttccctgacaga |
40110384 |
T |
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| Q |
113 |
ttaatctaagatcagtaaagatacggaagactactgacaatatgaaggaactgtggaacttcgacatgttgcatttacctgcccaacccataatatagaa |
212 |
Q |
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| T |
40110385 |
tcaaactaagatgaattaagatatggaggactaatgacagcttgaaggaactatggaacattaacatgttacatgtacctgcccaacccatattatagaa |
40110484 |
T |
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| Q |
213 |
gcgcaaaacccaagataaacagaagccggaaccaacgtatacctgcat |
260 |
Q |
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|| |||||||| ||||| | ||| |||||||||| |||||||||||| |
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| T |
40110485 |
gcacaaaacccgagatacaaagaggccggaaccagtgtatacctgcat |
40110532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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