View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16535_high_3 (Length: 668)
Name: NF16535_high_3
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 17724513 - 17724777
Alignment:
| Q |
1 |
attcgttggaagagcatttcgtgaaggaacgtgcggcggaggagaaatcggaggaggttgcgttggagaaggagatgtgggcacggtttgcgggaaccgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17724513 |
attcgttggaagagcatttcgtgaaggaacgtgcggcggaggagaaatcggaggaggttgcgttggagaaggagatgtgggcacggtttgcgggaaccgg |
17724612 |
T |
|
| Q |
101 |
gttttggagaagtgattctcaacgtcaaccgtgagttagttgaaccggtgaaccgaaccgaaccggtgaaactgttgtatataaaaaggatcggttattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17724613 |
gttttggagaagtgattctcaacgtcaaccgtgagttagttgaaccggtgaaccaaaccgaaccggtgaaactgttgtatataaaaaggatcggttattt |
17724712 |
T |
|
| Q |
201 |
cggcggaagatgcgttcgttgattaaggcaaatgcaacgtgttgatggttgcggaaatatctaga |
265 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17724713 |
cggcagaagatgcgttcgttgattaaggcaaatgcaacgtgttgatggttgcggaaatatctaga |
17724777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 367 - 493
Target Start/End: Original strand, 17724880 - 17725006
Alignment:
| Q |
367 |
atgtaaaattttggaatgtagtgcaacattctcatgatgcttgataatcaatttttctgtttggatcattgcataattttggtcgacatgaaagaactgt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17724880 |
atgtaaaattttggaatgtagtgcaacattctcatgatgcttgattgtcaatttttgtgtttggatcattgcataattttggtcgacatggaagaactgt |
17724979 |
T |
|
| Q |
467 |
tgaattgatttatgttgattggtgtgg |
493 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
17724980 |
tgaattgatatatgttgattggtgtgg |
17725006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 534 - 599
Target Start/End: Original strand, 17725049 - 17725115
Alignment:
| Q |
534 |
atgaattgattggtggtactagtgcaaggttgattacagtggaaatataatgaaa-aacacccactt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17725049 |
atgaattgattggtggtactagtgcaaggttgattacagtggaaatataatgaaataacacccactt |
17725115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 650
Target Start/End: Original strand, 41225946 - 41225996
Alignment:
| Q |
600 |
gaggatttggtgagggagtgctctggatttttgcataatattgttttgcag |
650 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41225946 |
gaggagttggtgagggagtgctctgtttttttgcataatattgttttgcag |
41225996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 600 - 661
Target Start/End: Original strand, 36480871 - 36480932
Alignment:
| Q |
600 |
gaggatttggtgagggagtgctctggatttttgcataatattgttttgcagaataatctacc |
661 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
36480871 |
gaggatttggtgaaggagagctctgtatttttgcataatattattttgcaggataatgtacc |
36480932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 656
Target Start/End: Complemental strand, 45814551 - 45814495
Alignment:
| Q |
600 |
gaggatttggtgagggagtgctctggatttttgcataatattgttttgcagaataat |
656 |
Q |
| |
|
|||||| |||||||||||||||||| ||| | ||||||| ||||||||||| ||||| |
|
|
| T |
45814551 |
gaggatatggtgagggagtgctctgtattatagcataattttgttttgcaggataat |
45814495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University