View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_high_35 (Length: 250)
Name: NF16535_high_35
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 23599576 - 23599333
Alignment:
| Q |
9 |
gaagaatataaaatcacacaaggaaaatatgtgtttttagttttacatagactatttttcaacttcgcacacattataaagagaggttatttgagatatt |
108 |
Q |
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| T |
23599576 |
gaagaatataaaatcacacaaggaaaatctgtgtttttagttttacatagactatttttcaacttcgcacacattataaagagaggttatttgagatatt |
23599477 |
T |
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| Q |
109 |
aactctactataaatacgtgccaaacaaggcaccaatctataattccacacggcaaaattaaacaccggtaaacaaacaaaaacaataatgcattataca |
208 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599476 |
aactctacaataaatacgtgccaagcaaggcaccaatctataattccacacggcaaaattaaacaccggtaaacaaacaaaaacaataatgcattataca |
23599377 |
T |
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| Q |
209 |
catgattaagctgatg--tataactcgaagaaagtacaatatac |
250 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23599376 |
catgattaagctgatgtatataactcgaagaaagtacaatatac |
23599333 |
T |
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