View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_high_4 (Length: 571)
Name: NF16535_high_4
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 92 - 476
Target Start/End: Original strand, 4474317 - 4474699
Alignment:
| Q |
92 |
tatctaagatggaaagaagctattcttggagctttcaatgttatggatgaggaggtgaagaaacaagagaatctagattgttcttgtagtggaaccactg |
191 |
Q |
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| T |
4474317 |
tatctaagatggaaagaagctattcttggagctttcaatgtaatggatgaggaggtgaagaaacaagagaatctagattgttcttgtagtggaaccactg |
4474416 |
T |
|
| Q |
192 |
ctgtagttgtcataagacaggtaaataaactttgatataaagatttagcaattcannnnnnnnatctttgttaaggaaaatatgataacaaaagaacaat |
291 |
Q |
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| T |
4474417 |
ctgtagttgtcataagacaggtaaataaactttgatatatagatttagcaattcatttttt--atctttgttaaggaaaatatgataacaaaagaacaat |
4474514 |
T |
|
| Q |
292 |
aaaatcagggtgaaggtcttgtcatagttaaccttggtgactcaagagcaatattaggaacaatccaagatgaaaaactcaaagccattcaattgaccac |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4474515 |
aaaatcagggtgaaggtcttgtcatagttaaccttggtgactcaagagcaatattaggaacaatccaagatgaaaaactcaaagccattcaattaaccac |
4474614 |
T |
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| Q |
392 |
tgatttgaagcctggtttgccttgtaagattcttctcataaactaactaccatgcagcttcttttcaagtattggtttgacggaa |
476 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4474615 |
tgatttgaagcctggtttgccttgtaagattcctctcataaactaactaccatgcagcttcttttcaagtattggtttgacggaa |
4474699 |
T |
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