View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_10 (Length: 479)
Name: NF16535_low_10
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 46467815 - 46467367
Alignment:
| Q |
17 |
agtaagaaaacacataaaatttgatgtggttggactcctattggcttatttcacataaacatctaaataaaatatacttcactttttcgcccagagcaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
46467815 |
agtaagaaaacacataaaatttgatgtggttggacacctcttggcttatttcacataaacatctaaataaaatatactccactttttcgtccagagcaca |
46467716 |
T |
|
| Q |
117 |
aaaaatcttaggacaggtacactagcatgatactgaaaagctgcagcccaacactgatgagtgatgaccaagaccatgccttgccaacacctagaccatg |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46467715 |
aaaaatcttaggacaggtacactagcatcatactgaaaagctgcagcccaacactgatga-------ccaagaccatgccttgccaacacctagaccatg |
46467623 |
T |
|
| Q |
217 |
tgttccaagcattggacatcacacgatcttcaacactcaggaggatcaaagtctnnnnnnntcaaggacaccaaataattatgcatgaacataattaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46467622 |
tgttccaagcattggacatcacacgatcttcaacactcaggaggatcaaagtctaaaaaaatcaaggacaccaaataattatgcatgaacataattaata |
46467523 |
T |
|
| Q |
317 |
ttcaagacaaatccttagtacactcaatcaaggacagtaacaaatgattgcagctagcagagacaccac-atatggagaccatatgtcgcttgtcccacg |
415 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
46467522 |
ttcaagtcaaatccttagtacactcaatcaaggacagtaacaaatgattgcagctagcagagacaccacaaaatggagaccatatgtcgcttgtcccacg |
46467423 |
T |
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| Q |
416 |
caccagtacatgatcagattcattccaccaaccatattcagctccttagtataatc |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46467422 |
caccagtacatgatcagattcattccaccaaccatattcagctccttagtacaatc |
46467367 |
T |
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