View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_11 (Length: 462)
Name: NF16535_low_11
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 54472534 - 54472110
Alignment:
| Q |
19 |
gcaacaccatattgtagctacataagattcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagctttagaggatccatttctgatcnnn |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472534 |
gcaacaccatattgtagctacataagattcaaatttggatcctctaccgcgtcgactatggcaccatgcaaaagctttagaggatccatttctgatcaaa |
54472435 |
T |
|
| Q |
119 |
nnnntaagaataggctatgaatcattaattaattaa------------cttcctccattaactattctaaacttcataacatgcttatttgcaaattcct |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472434 |
aaaataagaataggctatgaatcattaattaattaattaattaattagcttcccccattaactattctaaacttcataacatgcttatttgcaaattcct |
54472335 |
T |
|
| Q |
207 |
attnnnnnnngaaataggagatatataaaaatatataccgtgtgctggagtagggtagtaatgaatgtgatgaggttgtgatctcttcttccttcttgta |
306 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472334 |
attaaaaaaagaaataggagatatataaaaatatataccgtgtgctggagtagggtagtaatgaatgtgatgaggttgtgatctcttcttccttcttgta |
54472235 |
T |
|
| Q |
307 |
catataacgcagagtaggataatgacaaggaggattatacaagctgcacctgcaactgctattataccacccacgctcaattgattcccattgttatcat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472234 |
catataacgcagagtaggataatgacaaggaggattatacaagctgcacctgcaactgctattataccacccacgctcaattgattcccattgttatcat |
54472135 |
T |
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| Q |
407 |
ttgtattgttgccgttgttcgaggg |
431 |
Q |
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||||||||||||||||||||||||| |
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| T |
54472134 |
ttgtattgttgccgttgttcgaggg |
54472110 |
T |
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