View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_14 (Length: 432)
Name: NF16535_low_14
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 32648073 - 32648326
Alignment:
| Q |
19 |
agcacttacacaaacacggccacacaataatttggaaattgaaagaaattaatgcaacgtatgtgttggtatcatttcggtgttacgtgtgttagaacta |
118 |
Q |
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| T |
32648073 |
agcacttacacaaacacggccacacaataatttggaaattgaaagaaattaatgtaacgtatgtgttggtatcatttcggtgctacgtgtgttagaacta |
32648172 |
T |
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| Q |
119 |
agttggttcaaatacgatatttcattgttgatgttatgataacaaaacaaaagacaatttgtctattaattgtgtgtctcaatgtgcaggattaaagttg |
218 |
Q |
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| T |
32648173 |
agttggttcaaatacgatatttcattgttgatgttatgataacaaaacaaaagacaatttgtctattaattgtgtgtctcaatgtgcaggattaaagttg |
32648272 |
T |
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| Q |
219 |
ataactaagatatattaatgactaagagtccagttaggaaatctaagtattatt |
272 |
Q |
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| T |
32648273 |
ataactaagatatattaatgactaagagtccagttaggaaatctaagtattatt |
32648326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 32648317 - 32648445
Alignment:
| Q |
289 |
aagtcttattataaaataatgaacaatcaatcatgtttactaatagagaaatatgatttaattaattaagaagattcttgataaccttattcagcgtgaa |
388 |
Q |
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| T |
32648317 |
aagtattattataaaataatgaacaatcaatcatgtttactaatagagaa-tatgatttaa----ttaagaagattcttgataaccttattcagcgtgaa |
32648411 |
T |
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| Q |
389 |
aaatgtattgataaatcagaatatctcacctatg |
422 |
Q |
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| T |
32648412 |
aaatgtattgataaatcagaatatctcacctatg |
32648445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 32652089 - 32652205
Alignment:
| Q |
112 |
agaactaagttggttcaaatacgatatttcattgttgatgtt---atgataacaaaacaaa-agacaatttgtctattaattgtgtgtctcaatgtgcag |
207 |
Q |
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| T |
32652089 |
agaaccaagttgattaaaatacgatctctcattgttgatgttttgatgataacaaaacaaataaataatttgtctgctaaccgtgtgtctcaatgtgcag |
32652188 |
T |
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| Q |
208 |
gattaaagttgataact |
224 |
Q |
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| T |
32652189 |
gattaaaattgataact |
32652205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 32652282 - 32652351
Alignment:
| Q |
269 |
tattcagctgaataatcacaaagtcttattataaaata---atgaacaatcaatcatgtttactaatagag |
336 |
Q |
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| T |
32652282 |
tattcagttgaataatcacaaa-tattattataaactattaatgaacaatcaatcatgtttgctaatagag |
32652351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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