View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_15 (Length: 424)
Name: NF16535_low_15
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 53090559 - 53090966
Alignment:
| Q |
18 |
tatagaacctggtgtttgagtttggttgcagttgcatagagctctccagctaaaactttatcaccgaataatgtaacagcctctttgacggacctgaatg |
117 |
Q |
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| T |
53090559 |
tatagaacctggtgtttgagtttggttgcagttgcatagagctctccagctaaaactttatcaccgaataatgtaacagcctctttgacggacctgaatg |
53090658 |
T |
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| Q |
118 |
gcgcccttgtgtctatctctgtatttctggtgagcagcatcacaccctctttattcttattcatctttgtgttaga-----------gagagaagaatga |
206 |
Q |
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| T |
53090659 |
gcgcccttgtgtctatctctgtatttctggtgagcagcatcacaccctctttattcttattcatctttgtgttagaagatagagatagagagaagaatga |
53090758 |
T |
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| Q |
207 |
gataattaggttagttataagtagtagttagtaatgtgtagtagaaatggacaatattaaaggagacaattggcataatatatggtatgaagattggaag |
306 |
Q |
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| T |
53090759 |
gataattaggttggttataagtagtagttagtaatgtgtagtagaaatggacaatattaaaggagacaattggcataatatatggtatgaagattggaag |
53090858 |
T |
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| Q |
307 |
cttcgtttcttcgcgtccactttactagaacaattctgttatactatctcagaaagagaaccaaagcggtgggtggatatgctattggtcttggatattg |
406 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53090859 |
cttcgtttcttcgcgtccacttcactagaacaattctgttatactatctcagaaagagagccaaagcggtgggtggatatgctattggtcttggatattg |
53090958 |
T |
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| Q |
407 |
ttcctatg |
414 |
Q |
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| T |
53090959 |
ttcctatg |
53090966 |
T |
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