View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_16 (Length: 409)
Name: NF16535_low_16
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 39973883 - 39974271
Alignment:
| Q |
11 |
cagagaaatgacacatgggcatgtaaatttattagtctaccaaaaacacttcatgtgaatgctacagttacat--acatatttatttcaccaacgctgga |
108 |
Q |
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| T |
39973883 |
cagagaaatgacacatgggcatgtaaatttattagtctaccaaaaacacttcatgtgaatgctacagttacatgtacatatttatttcaccaacgctgga |
39973982 |
T |
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| Q |
109 |
tgctatgttaatgccaaaacttttcaccaaatgtatggcacaggtgatcatgagcaacagttcaatttcacaggggaataataagtgaagtgaaccatat |
208 |
Q |
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| T |
39973983 |
tgctatgttaatgccaaaacttttcaccaaatgtatggcacaggtgatcatgatcaacaattcaatttcacaggggaataataagtgaagtgaaccatat |
39974082 |
T |
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| Q |
209 |
atacttcaatcttatcatataaatttttcatgtttatctcgttttcatagaatttgataagactgagtnnnnnnnttgaattagataagataaatgttac |
308 |
Q |
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| T |
39974083 |
atccttcaatcttatcatataaaattttcatgtttatctcgttttcatagaatttgataagactgagtaaaaaaatagaattagataagataaatgttac |
39974182 |
T |
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| Q |
309 |
cagagtcttacttcattataa---tagacgatattactggataaggccatagaaaaaagtaaaatatagtaattgaatagtatttaatt |
394 |
Q |
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| T |
39974183 |
cagagtcttgcttcattataatactagatgatattactggataaggctatagaaaaaagtaaaatatagtaattgaatagtatttaatt |
39974271 |
T |
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