View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_17 (Length: 397)
Name: NF16535_low_17
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Complemental strand, 32553237 - 32552865
Alignment:
| Q |
9 |
gagatgaaaataagtataacggatttcacattgacattcacattctaatgatttcacattgaaatctttcttattgaataagatattctccaacattgag |
108 |
Q |
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| T |
32553237 |
gagatgaaaataagtataacggatttcacattgacattcacattctaatgatttcacattgaaatctttcttgttgaataagatattctccaacattgag |
32553138 |
T |
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| Q |
109 |
agaattttcacttggacaacacttacctaaccaagtagtacttttattccttattctttgatgcctgggaaatatctttatcccttattctaattcatat |
208 |
Q |
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| T |
32553137 |
agaattttcacttggacaacacttacctaaccaagtagtacttttattccttattctttgatgcctgggaaatatctttatcccttattctaattcatat |
32553038 |
T |
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| Q |
209 |
taatgttgcaatatccatcgaccttgtttaaggacacttagtcataaacaacacaatattgaaaaaatctggtgactttatctcaatgaattgtgcaatt |
308 |
Q |
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| T |
32553037 |
taatgttgcaatatccatcgaccttgtttaaggacacttattcataaacaacacaatattgaaaaaatctggtgactttatctcaatgaattgtgcaatt |
32552938 |
T |
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| Q |
309 |
agctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaac |
381 |
Q |
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| T |
32552937 |
agctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaac |
32552865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 87 - 376
Target Start/End: Complemental strand, 32549839 - 32549553
Alignment:
| Q |
87 |
taagatattctccaacattgagagaattttcacttggac-aacacttacctaaccaagtagtacttttattccttattctttgatgcctgggaaatatct |
185 |
Q |
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| T |
32549839 |
taagatattctccgacattgagagaattttcacttggaccaacacttg--taaccatgtagtattcttatttcttattctttgatgcctgggaaatatat |
32549742 |
T |
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| Q |
186 |
ttatcccttat-tctaattcatattaatgttgcaatatccatcgaccttgtttaaggacacttagtcataaacaacacaatattgaaaaaatctggtgac |
284 |
Q |
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| T |
32549741 |
tttatcctaatatcatatt---attaatgttgcaacattcatcgaccttctttaacgacacttggtcataaacaacgtaatattgaaaacatatggtgac |
32549645 |
T |
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| Q |
285 |
tttatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattc |
376 |
Q |
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| T |
32549644 |
tttaactccatgaattgtgcgatttgctttgcaaaccttgagaacaattcatccatgatatcttcaccaaactgagctattaaaatagattc |
32549553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 377
Target Start/End: Complemental strand, 32547259 - 32547169
Alignment:
| Q |
287 |
tatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattca |
377 |
Q |
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| T |
32547259 |
tatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccatgatgttttctccaaacccggctattaaaagaggttca |
32547169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 32647998 - 32648088
Alignment:
| Q |
287 |
tatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattca |
377 |
Q |
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| T |
32647998 |
tatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccataatgttttctccaaatccagctattaaaagaggttca |
32648088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 32550020 - 32549977
Alignment:
| Q |
30 |
gatttcacattgacattcacattctaatgatttcacattgaaat |
73 |
Q |
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| T |
32550020 |
gatttcacattgacattaacattccaatgatttcacattgaaat |
32549977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 27879256 - 27879166
Alignment:
| Q |
290 |
ctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaa |
380 |
Q |
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|||||||| ||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||| | |||||||||||| ||||||| |
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| T |
27879256 |
ctcaatgagctgtgcaagcagctttgcaaatcttgagaacaattcatccatgatattttcaccaaacccgtctattaaaagaggttcaaaa |
27879166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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