View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_19 (Length: 361)
Name: NF16535_low_19
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 1917772 - 1917592
Alignment:
| Q |
19 |
aaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtcttcttcgataaaacgcaccga |
118 |
Q |
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| T |
1917772 |
aaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtcttcttcgataaaacgcaccga |
1917673 |
T |
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| Q |
119 |
aagctactcaaacccaatctgtctaaataacgatcaactgaactgccaaaaaatctcaggaaccacagtttagatcacgac |
199 |
Q |
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| T |
1917672 |
aagctactcaaacccaatctgtctaaataacgatcagctgaactgccaaaaaatctcaggaaccacagtttagatcacgac |
1917592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 1917526 - 1917446
Alignment:
| Q |
265 |
gagacggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcat |
345 |
Q |
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| T |
1917526 |
gagacggacacctgtacttctactcatacagacaaggatcagaaacaccaagacaacaatgctgaaagttcaagtcttcat |
1917446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 29120805 - 29120963
Alignment:
| Q |
40 |
tatgacagagaaacaaaag-tatatcacagcagcttcataagcgatgctccaacctgtcttcttcgataaaacgcaccgaaagctactcaaacccaatct |
138 |
Q |
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| T |
29120805 |
tatgacagagaaacaaaaaatatatcacaacagctccataagcgatgctctgacctgtcttcttcgataaaacacaccaaaagctactcaaacccaatct |
29120904 |
T |
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| Q |
139 |
gtctaaataacgatcaactgaactgccaa-aaaatctcaggaaccacagtttagatcac |
196 |
Q |
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| T |
29120905 |
gactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcac |
29120963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 29121038 - 29121113
Alignment:
| Q |
270 |
ggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcat |
345 |
Q |
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| T |
29121038 |
ggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaacaatgctgaaaattcaagtcttcat |
29121113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 44516071 - 44515990
Alignment:
| Q |
17 |
caaaaataaaccaccaccactgatatgacagagaaac--aaaagtatatcacagcagcttcataagcgatgctccaacctgt |
96 |
Q |
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|||||||||||||||||||| |||||||||| |||| |||| ||||||||| ||| ||||||||||||||| |||||| |
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| T |
44516071 |
caaaaataaaccaccaccacaaatatgacagacaaacaaaaaaatatatcacaatggctccataagcgatgctccgacctgt |
44515990 |
T |
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