View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16535_low_2 (Length: 689)
Name: NF16535_low_2
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 20 - 689
Target Start/End: Original strand, 47826306 - 47826975
Alignment:
| Q |
20 |
cctagctggctattattttcatcacatc-----tctatagtcttccacatcattgctctaaaaccctgtcttaatttcactctttgatttctcgagttca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826306 |
cctagctggctattattttcatcacatcacatctctatagtcttccacatcattgctctaaaaccctgtcttaatttcactctttgatttctcgagttca |
47826405 |
T |
|
| Q |
115 |
attgcttacacaatttgatttaatcattgtgcaaatttgtttgtatttggtattatacattaattagaaaacatgttgtctaggaaggctagtgaagact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826406 |
attgcttacacaatttgatttaatcattgtgcaaatttg----tatttggtataatacattaattagaaaacatgttgtctaggaaggctagtgaagact |
47826501 |
T |
|
| Q |
215 |
ctcatggccaagactcttcttacttcctaggatggcaagagtacgagaagaatccctatcacccaattcataatcccacgggaatcattcagatgggact |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826502 |
ctcatggccaagactcttcttacttcctaggatggcaagagtacgagaagaatccctatcacccaattcataatcccacgggaatcattcagatgggact |
47826601 |
T |
|
| Q |
315 |
tgcggagaatcaggtaaattagtttgtttattattataactcaagtatatttataatgaatccatgctgctacaagtatatatatagatagagattgaaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826602 |
tgcggagaatcaggtaaattagtttgtttattattataactcaagtatatttataatgactccatgctgctacaagtatatatatagatagagattgaaa |
47826701 |
T |
|
| Q |
415 |
aaatgaaactattaagatgtcccgtacgggggacacaaaaggatagtatgtca---annnnnnnnncttcttcaccaaagttattattatatgctaggac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47826702 |
aaatgaaactattaagatgtcccgtacgggggacacaaaaggatagtatgtcactttttttttttttttcttcaccaaagttattattatatgctaggac |
47826801 |
T |
|
| Q |
512 |
taaacatttaaaattatcattttctcttatatctatctggtccctaataaactatcaaaatactcagtgagctaacattatgttaaccatttacacaata |
611 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826802 |
taaacatttaaaattatcattttctctta----tatctggtccctaataaactatcaaaatactcagtgagctaacattatgttaaccatttacacaata |
47826897 |
T |
|
| Q |
612 |
atactagtaatagttcagagtatattacttattgatttaatgctaactttatgttttagtttgttagttcatgctaat |
689 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47826898 |
ataccagtaatagttcagagtatattacttattgatttaatgctaactttatgttttagtttgttagttcatgctaat |
47826975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 40207046 - 40207099
Alignment:
| Q |
216 |
tcatggccaagactcttcttacttcctaggatggcaagagtacgagaagaatcc |
269 |
Q |
| |
|
||||||||||||||| || |||||| |||||||| |||| |||||||| ||||| |
|
|
| T |
40207046 |
tcatggccaagactcctcatacttcttaggatgggaagaatacgagaaaaatcc |
40207099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University