View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16535_low_24 (Length: 341)
Name: NF16535_low_24
Description: NF16535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16535_low_24 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 12417321 - 12417009
Alignment:
| Q |
13 |
aatataaactaaaatatgtatatgtttgttaagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgat |
112 |
Q |
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| T |
12417321 |
aatataaactaaaatatgtatatgtttgttaagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgat |
12417222 |
T |
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| Q |
113 |
aattttgaacaagaaatgattcattgaaatcaaataaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtata |
212 |
Q |
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| T |
12417221 |
aattttgaataagaaatgattcattgaaatcaaataaatttcaatgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtata |
12417122 |
T |
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| Q |
213 |
attcaagctcaatagtgttttattgttaacaattcgatgtcaacaaatttttataccattcagcactagcctttggtacacgcttgagattatcattaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12417121 |
attcaagctcaatagtgttttattgttaacaattcgatgtcaacaaatttttataccattcagcactagcctttggtacacgcttgagattatcattaaa |
12417022 |
T |
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| Q |
313 |
gtcaacatgataa |
325 |
Q |
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| T |
12417021 |
gtcaacatgataa |
12417009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 42 - 325
Target Start/End: Complemental strand, 19523 - 19238
Alignment:
| Q |
42 |
taagctttggcttacaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttgataattttgaacaagaaatgattcattgaaa |
141 |
Q |
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| T |
19523 |
taagcttttgcttacataaattcaattgagcttaaaaaaacgttgaaactacagaagtgcaagtatttgacggtattgaacaataaatcattaatttaaa |
19424 |
T |
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| Q |
142 |
tcaaataaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttccttttt--agtataattcaagctcaatagtgttttattgtt |
239 |
Q |
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| T |
19423 |
tcgattaaatttcaatgaaatatatttttctatttctctatgtttgatccattttcttccctttttgagtacaatccaagctcaataggcttttattttc |
19324 |
T |
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| Q |
240 |
aacaattcgatgtcaacaaatttttataccattcagcactagcctttggtacacgcttgagattatcattaaagtcaacatgataa |
325 |
Q |
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| T |
19323 |
tataattcgatgtcataaaatttctataccatttagcactagcctttggcacacgcttgagattatcattaaaatcaacatgataa |
19238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 25012642 - 25012946
Alignment:
| Q |
13 |
aatataaactaaaatatgtatatgtttgttaagctttggctt-acaaaaatccaattgagattaatgagaagttgaaagtacaaatgtgcaagcatttga |
111 |
Q |
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||||| ||||||||||||||| | || |||| ||||| ||| | ||||||||||| ||| |||| || ||| |||||||| | ||||||||| ||| |
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| T |
25012642 |
aatatgaactaaaatatgtatctactttttaa-ctttgacttaaaaaaaatccaatcgagcttaaagaaaagatgaaagtaggtaaatgcaagcatctga |
25012740 |
T |
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| Q |
112 |
taattttgaacaagaaatgattcattgaaatcaaataaatttcaacgaaatttaattttctatttctctaggcttgttccatttgcttcctttttagtat |
211 |
Q |
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| T |
25012741 |
taattttgaacaataaatgattcatttaaatcaattaaatttcaatgaaatttatttgtctttttctctatgtgtgatccatttgcttccctttttgta- |
25012839 |
T |
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| Q |
212 |
aattcaagctcaatagtgttttattgttaacaattcgatgtcaacaaatttttataccattcagcactagcctttggtacacgcttgagattatcattaa |
311 |
Q |
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|| ||||||||||||||||||| |||| | |||| || |||||| ||||||||||| ||||| | |||||||||||||||||||||||||||| |
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| T |
25012840 |
aaatcaagctcaatagtgttttcttgtctataattaga-------aaatttctataccattcaacactaacatttggtacacgcttgagattatcattaa |
25012932 |
T |
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| Q |
312 |
agtcaacatgataa |
325 |
Q |
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| T |
25012933 |
aatcaacatgataa |
25012946 |
T |
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